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Add input-order randomization test for assembly

Status: Open.

#148 In openvax/isovar;

· iskandr opened on Apr 16, 2026

Assembly algorithm: correctness edge cases, O(n³) scaling, and improvement proposal

Status: Open.

#147 In openvax/isovar;

· iskandr opened on Apr 16, 2026

Docs: DataFrameBuilder 'exclude' docstring says the opposite of what the code does

Status: Open.

#135 In openvax/isovar;

· iskandr opened on Apr 15, 2026

Docs: README example references non-existent property 'protein_sequence_matches_predicted_effect'

Status: Open.

#133 In openvax/isovar;

· iskandr opened on Apr 15, 2026

Docs: run_isovar docstring has wrong parameter name and wrong return type

Status: Open.

#129 In openvax/isovar;

· iskandr opened on Apr 15, 2026

Use another genome/annotation?

Status: Open.

#123 In openvax/isovar;

· dining-philosopher opened on Aug 12, 2021

Can I specify which ensembl release to use by the isovar command line?

Status: Open.

#122 In openvax/isovar;

· nknewnew opened on Jan 20, 2021

RNA sequencing coverage

Status: Open.

#120 In openvax/isovar;

· nknewnew opened on May 20, 2020

get more than the top protein sequence

Status: Open.

#118 In openvax/isovar;

· drna opened on Nov 8, 2019

Weird chromosome bug in MT variant under GRCh38

Status: Open.

#116 In openvax/isovar;

· iskandr opened on Aug 2, 2019

Normalize counts by number of mapped reads to get CPM

Status: Open.

#112 In openvax/isovar;

· iskandr opened on Jun 18, 2019

Constructing wildtype peptides

Status: Open.

#100 In openvax/isovar;

· felixfrenkel opened on Jul 12, 2018