Feature visualization - #180

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KarinSchork wants to merge 22 commits into

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feature-visualization

Commits on Aug 20, 2026

first version of visualization subworkflow and module (WIP)

KarinSchork
authored and
julianu
committed
7917d08
start with visualization module

KarinSchork
authored and
julianu
committed
b4c64e5
add all arguments

KarinSchork
authored and
julianu
committed
2bfa3a3
test with multiple hdf5 and spike-ins

KarinSchork
authored and
julianu
committed
c6ac3d2
finish qc visualization module

KarinSchork
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julianu
committed
82d8399
add visualization subworkflow

KarinSchork
authored and
julianu
committed
67a53fb
delete TODO comments

KarinSchork
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julianu
committed
16fdcd7
describe output

KarinSchork
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julianu
committed
0f38bf9
add spikein table

KarinSchork
authored and
julianu
committed
29a4cfa
add parameters to nextflow schema

KarinSchork
authored and
julianu
committed
30a8b63
fix defaults in config and schema

KarinSchork
authored and
julianu
committed
0c00724
change default for output column order

KarinSchork
authored and
julianu
committed
811365d
fixing linter code-style issues
julianu
committed
77f783c
fixing prek code-style issues
julianu
committed
7fbaeca
fix output_column_order default value
KarinSchork
committed
7f96ba5
avoid ext.args
KarinSchork
committed
2ff40cb

Commits on Aug 21, 2026

delete environment.yml
KarinSchork
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1480426
clean up main.nf
KarinSchork
committed
7980a54
clean up generation of output subfolders
KarinSchork
committed
3a4d8f4
rename parameter RT_unit to rt_unit
KarinSchork
committed
d6228e3
python script needs upper case
KarinSchork
committed
8892abf
improve documentation
KarinSchork
committed
4212b44