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1. nf-core/mspepid nf-core/mspepid Public

   This pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can be selected.

   Nextflow 3 1

2. mpc-bioinformatics/McQuaC mpc-bioinformatics/McQuaC Public

   The pipeline performs a comprehensive quality control of mass spectrometry-based proteomics experiments.

   Python 4

3. mzQC mzQC Public

   Forked from HUPO-PSI/mzQC

   Standard format development for control of quality

   Python

4. mzIdentML mzIdentML Public

   Forked from HUPO-PSI/mzIdentML

   Repository for mzIdentML and the corresponding examples

   Java

5. medbioinf/pia medbioinf/pia Public

   📚 🔬 PIA - Protein Inference Algorithms

   Java 25 8

6. mpc-bioinformatics/pia-tutorial mpc-bioinformatics/pia-tutorial Public

   Tutorial for PIA - Protein Inference Algorithms

   TeX 1 3