New recipe for TIR-Learner4, a tool for identifying TIR transposable

recipes/tir-learner4/build.sh

@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# Install package files
+mkdir -p "$PREFIX/lib/tir-learner4"
+cp -r TIR-Learner4/* "$PREFIX/lib/tir-learner4/"
+
+# Fix shebang in main script (original has #!/usr/app/env python3, a typo)
+sed -i '1s|.*|#!/usr/bin/env python3|' "$PREFIX/lib/tir-learner4/TIR-Learner.py"
+
+# Create CLI wrapper
+mkdir -p "$PREFIX/bin"
+cat > "$PREFIX/bin/tirlearner4" << 'EOF'
+#!/usr/bin/env bash
+exec python3 "$(dirname "$(dirname "$(readlink -f "$0")")")/lib/tir-learner4/TIR-Learner.py" "$@"
+EOF
+chmod +x "$PREFIX/bin/tirlearner4"

recipes/tir-learner4/meta.yaml

@@ -0,0 +1,43 @@
+{% set name = "tir-learner4" %}
+{% set version = "1.0" %}
+{% set sha256 = "6f0f5725476576ae224211e7e11605cc7ddeb42a99cae28a02cedebb79cdac40" %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/KGerhardt/TIR-Learner/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('tir-learner4', max_pin='x') }}
+
+requirements:
+  run:
+    - python >=3.9,<3.13
+    - numpy
+    - pyfastx
+    - pywfa
+    - keras
+    - pytorch
+    - genometools-genometools
+    - genericrepeatfinder
+    - blast
+    - pigz
+
+test:
+  commands:
+    - tirlearner4 --help
+
+about:
+  home: https://github.com/KGerhardt/TIR-Learner
+  summary: "Accelerated tool for identifying TIR transposable elements"
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  dev_url: https://github.com/KGerhardt/TIR-Learner
+  doc_url: https://github.com/KGerhardt/TIR-Learner/blob/main/README.md