New recipe for TIR-Learner4, a tool for identifying TIR transposable#64183
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KGerhardt wants to merge 1 commit intobioconda:masterfrom
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New recipe for TIR-Learner4, a tool for identifying TIR transposable#64183KGerhardt wants to merge 1 commit intobioconda:masterfrom
KGerhardt wants to merge 1 commit intobioconda:masterfrom
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elements in eukaryotic genomes using GRF, TIRvish, and CNN classification.
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Apr 7, 2026
| # Create CLI wrapper | ||
| mkdir -p "$PREFIX/bin" | ||
| cat > "$PREFIX/bin/tirlearner4" << 'EOF' | ||
| #!/bin/bash |
| @@ -0,0 +1,17 @@ | |||
| #!/bin/bash | |||
| @@ -0,0 +1,43 @@ | |||
| {% set name = "tir-learner4" %} | |||
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This should maybe be TIR-Learner
Then you can use {{ name }} in all your URLs;
But use {{ name | lower || for the package name.
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Bioconda package try number 2 for TIR-Learner v4. Incorporated fixes suggested from pull 63598 as well as some code improvements. I've closed the old pull.
The code publishes a new TIR-Learner package separately from TIR-Learner v3. The v3 program is still in review for publication and we don't want to overwrite or interrupt it, but do want to switch to this version of TIR-Learner for our own use.
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