Fix macos tests and implement isolation window and collision energy - #6
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## Architecture & Core * Refactored C#, Rust, and Python layers to use a handle-based architecture, enabling support for simultaneous open files. * Implemented centroid streaming in C# and Rust, including logic to safely skip excessively large raw data payloads. ## Python Bindings * Propagated file handles to all objects in `classes.py` and `raw_file.py` to ensure proper routing for native `get_*` calls. * Added `gradient.py` to parse Vanquish Neo pump gradients from instrument method texts. ## Testing & CI * Added test suite covering centroid streaming, collision energy extraction, gradient parsing, and metadata. * Added compressed `.raw.gz` test data and a `conftest.py` fixture. * Patched CI scripts (`patch_fisher_py.py` and `test.yml`) to resolve `AssemblyLoadContext` loading errors during parity testing. ## Build System & Dependencies * Bundled required Thermo `.dll` files directly into the Python package for Maturin builds. * Updated `build.sh`, `pyproject.toml`, and `.gitignore` configurations.
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