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viral-ecology

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Qasim-Hussain-Code / comparative_neurodysbiosis_viromics_pipeline

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Comparative viromics pipeline designed to profile gut viral communities in neurodysbiosis and control cohorts. Implements de novo MEGAHIT assembly, geNomad prediction, CheckV quality assessment, and Bowtie2 read recruitment to characterize gut bacteriophage signatures in humanized mouse models.

metagenomics de-novo-assembly autism-spectrum-disorder microbiome-analysis microbial-ecology phages megahit viral-ecology viromics bacteriophages genomad gut-brain-axis checkv neurodysbiosis votus gut-virome
  • Updated Jul 16, 2026
  • Shell

PanpanXu1 / bat-anal-swab-viral-diversity

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Reproducible code and analysis-ready data for bat anal-swab viral discovery, viral diversity, host-virus sharing, environmental associations, and spatial prioritization of bat coronavirus surveillance across China and mainland Southeast Asia.

reproducible-research metatranscriptomics viral-diversity viral-ecology viral-discovery bat-anal-swabs bat-viruses host-virus-sharing coronavirus-surveillance spatial-prioritization
  • Updated Jul 29, 2026
  • Python

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