Estimate cyanobacteria density based on Sentinel-2 satellite imagery
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May 12, 2026 - Python
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cyanobacteria
Here are 40 public repositories matching this topic...
CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
metabarcoding taxonomy-assignment taxonomic-classification amplicon-datasets amplicon-sequencing cyanobacteria taxonomy-database
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Oct 9, 2024
This is the repository for the CTCB project
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Jun 4, 2024 - Jupyter Notebook
Effective classification of cyanobacteria blooms severity of small inland water bodies with AI by integrating Sentinel-2 data from GEE, DEM data from MPC and climate data from NOAA
machine-learning classification google-earth-engine data-fusion cyanobacteria harmful-algal-blooms inland-water
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May 7, 2026 - Jupyter Notebook
NinjaPBR - An open-source photobioreactor to study circadian growth in microalgae and cyanobacteria
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Jul 15, 2019 - PostScript
Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
machine-learning multiobjective-optimization metabolic-network flux-balance-analysis cyanobacteria multiomics
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Nov 10, 2023 - MATLAB
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
bioinformatics help-wanted rna bacteria phylogeny phycology rrna rna-folding cyanobacteria 16s-rrna 23s 16s-seq rnafolding 16s-23s
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Jan 12, 2023 - Python
Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client
automation psi measurement optimization-tools algae photobioreactor optimization-algorithms photosynthesis respiration growth-rate cyanobacteria microalgae growth-characterization protocol-scripting
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Aug 17, 2022 - JavaScript
The influence of time scale on autocorrelation as an early warning indicator of regime shift
frequency scale time-series autocorrelation bifurcation early-warnings critical-slowing-down applied-ecology sonde high-frequency algal-bloom cyanobacteria bga phycocyanin chlorophyll hopf eutrophication
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Aug 10, 2021 - R
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
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Jan 17, 2023 - MATLAB
RNA-seq data analysis for the role of a cryptic tRNA gene operon in the recovery from translational stress in the cyanobacterium Nostoc using bioconductor R packages
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Nov 9, 2020 - R
Graphical User-interface for the NinjaPBR Photobioreactor, based on wxPython.
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Dec 15, 2015 - Python
Code for a pipeline to analyse phase contrast timelapse images of Cyanobacteria
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Jun 27, 2025 - Jupyter Notebook
Automated DubSeq data analysis
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Nov 19, 2021 - Python
This project is about the hypothesis that symbiosis factor contributes to cyanobacterial genome expansion
python bioinformatics jupyter-notebook comparative-genomics genome-evolution symbiosis cyanobacteria
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Jul 13, 2026 - Jupyter Notebook
BloomOS / CyanoHAB Protocol — Process governance architecture for harmful algal bloom detection and cyanotoxin risk monitoring. Deterministic validator pipeline + immutable Flight Recorder audit trail. Sovereign Process Architecture Inc. specification (Corp. 1781822-0).
noaa water-quality epa environmental-monitoring cyanobacteria lake-erie harmful-algal-blooms ai-compliance ai-governance process-governance microcystin spec-driven-development deterministic-ai regulated-industries ai-audit-trail cyanohab drinking-water-safety methodology-specification sovereign-process-architecture scientific-operating-system
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May 29, 2026
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
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Jan 17, 2023 - MATLAB
Reproducible cheminformatics workflow using secondary-metabolite similarity to rank likely diazotrophic cyanobacterial producers.
machine-learning r cheminformatics computational-biology metabolomics cyanobacteria nitrogen-fixation
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Jul 17, 2026 - HTML
This is the repository containing the code, files, and results of the paper "Proteomics of long-term response of the desert cyanobacterium Chroococcidiopsis sp. CCMEE 029 in perchlorate-rich medium and its implications for in situ resource utilization on Mars"
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Feb 26, 2026 - R
Phylogeny-aware machine learning model that predicts cyanotoxin presence by learning statistical associations between clade structure and tip-level traits
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Jan 29, 2026 - Python
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