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Pull requests: satijalab/seurat-wrappers

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Pull requests list

exposed batch_size parameter to prevent the final minibatch from having 1 cell
#230 opened Feb 13, 2026 by AtSourav Loading…
allow regress out covariates for scVI intergration
#220 opened Aug 21, 2025 by fentouxungui Loading…
Adding decoupleR wrapper
#217 opened Jul 10, 2025 by Lilas11 Loading…
Add Coralysis integration to SeuratWrappers
#215 opened Jul 1, 2025 by antonioggsousa Loading…
Updates to RunBanksy
#214 opened Jun 6, 2025 by jleechung Contributor Loading…
1
fixed the error when use SCT run scvi and set multiple threads
#203 opened Oct 25, 2024 by Moonerss Loading…
FindAllMarkers in CIPR docs
#198 opened Aug 22, 2024 by MauKappel Loading…
miQC: fix "undefined columns selected" if column renamed
#195 opened Aug 1, 2024 by kew24 Loading…
Adapt SEraster for Seurat spatial objects
#190 opened May 1, 2024 by zskylarli Loading…
26
Fixed bug with running scVI integration over SCTransformed data
#184 opened Mar 8, 2024 by GreenGilad Loading…
Add a wrapper for scanorama integration method (in a Seurat V5 flavor)
#175 opened Jan 5, 2024 by fspecque Loading…
1
UCell support
#158 opened Apr 27, 2023 by mass-a Loading…
fastTopics wrapper
#151 opened Mar 20, 2023 by pcarbo Loading…
3
Update liger.Rmd
#149 opened Feb 20, 2023 by adrdufour Loading…
Add scGSEA to Seurat Wrappers
#147 opened Jan 12, 2023 by melania15 Loading…
Add R.utils in imports section of the DESCRIPTION
#131 opened Jun 30, 2022 by zhanghao-njmu Contributor Loading…
add dsb to SeuratWrappers
#130 opened Apr 28, 2022 by MattPM Loading…
5
Add CIARA to seurat wrappers
#125 opened Mar 16, 2022 by gabrielelubatti Loading…
2
adding support for Seurat 4, allow exporting multiple matrices, stop …
#102 opened Jun 24, 2021 by maximilianh Contributor Loading…
7
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