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@mpc-bioinformatics Medizinisches Proteom-Center, Medical Bioinformatics

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    38 repositories

    • McQuaC

      Public
      The pipeline performs a comprehensive quality control of mass spectrometry-based proteomics experiments.
      quality-controlpipelinenextflow
      quality-controlpipelinenextflowproteomicsnf-core
      Python
      •
      MIT License
      •0•4•51•3•Updated Aug 25, 2026Aug 25, 2026

    • macproqc-helpers

      Public
      Python helpers for macproqc pipeline
      Python
      •
      Other
      •1•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • ProtStatsWF

      Public
      Statistics Workflows for Proteomics Data
      R
      •
      Other
      •0•2•49•0•Updated Aug 21, 2026Aug 21, 2026

    • LSPFP

      Public
      LSPFP — Lysate and Secretome Peptide Feature Plotter
      R
      •1•0•2•0•Updated Aug 21, 2026Aug 21, 2026

    • bppg

      Public
      R Package for bipartite peptide-protein graphs
      R
      •
      Other
      •0•3•16•0•Updated Aug 15, 2026Aug 15, 2026

    • msidentdenovo

      Public
      MS Identification using de novo tools
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • macproqc-test-data

      Public
      Test data for macproqc
      0•0•0•0•Updated Aug 6, 2026Aug 6, 2026

    • biohackGermany25_gamification

      Public
      4th BioHackathon Germany report: Exploring Gamification Strategies to Enhance Bioinformatics Training
      TeX
      •0•0•0•0•Updated Aug 6, 2026Aug 6, 2026

    • unbeQuant

      Public
      unbeQuant - An unknown (not identified) MS1-Feature Quantification Workflow
      Python
      •
      Other
      •0•0•2•0•Updated Aug 6, 2026Aug 6, 2026

    • TDP43_interactome

      Public
      This is the code used for data analysis in the manuscript "Stress and recovery related changes in the TDP-43 dynamic interactome in ALS/FTD pathologies" by Nima…
      R
      •
      Other
      •0•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • bioinfomatics_for_proteomics_tutorial_data

      Public
      This is just data.
      0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • xic-extractor

      Public
      A XIC-Extractor workflow written in Python/nextflow. Simply extract XICs by providing a CSV with an option to plot the XICs in plotly.
      Python
      •
      Other
      •0•0•0•0•Updated Jul 6, 2026Jul 6, 2026

    • ProGFASTAGen

      Public
      Protein-Graph-FASTA-Generation and Identification
      C++
      •
      Other
      •0•2•0•1•Updated Jul 3, 2026Jul 3, 2026

    • CalibraCurve

      Public
      CalibraCurve
      calibrationtargeted-proteomicsassays
      calibrationtargeted-proteomicsassaysquantification-limitsdynamic-linear-ranges
      R
      •
      Other
      •2•5•9•0•Updated Jun 1, 2026Jun 1, 2026

    • swirl_R_course

      Public
      Interactive training material using the swirl R package for our R-courses
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 21, 2026May 21, 2026

    • feature_importance_robustness

      Public
      Scripts used to determine the robustness of feature importance methods on a sepsis clinical dataset
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • predict_vancomycin

      Public
      R
      •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • UQ_test_feature_finders

      Public
      Python
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • ProtGraph

      Public
      ProtGraph - A Graph-Generator for Proteins
      graphpypipython3
      graphpypipython3proteinbiocondafastauniprotpeptide
      Python
      •
      Other
      •8•13•6•0•Updated Mar 4, 2026Mar 4, 2026

    • CalibraCurve_NF

      Public
      Nextflow workflow for CalibraCurve
      R
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • autoQuaC

      Public
      Python
      •
      Other
      •0•0•2•0•Updated Jan 20, 2026Jan 20, 2026

    • ProtStatsWF_NF

      Public
      Nextflow scripts and workflows related to the ProtStatsWF R package for statistical analysis and visualization of proteomics data
      Jupyter Notebook
      •0•0•3•0•Updated Aug 8, 2024Aug 8, 2024

    • bipartite-peptide-protein-graphs

      Public
      R
      •
      Other
      •0•2•0•0•Updated Jul 9, 2024Jul 9, 2024

    • nf-cloud

      Public archive
      A web interface for Nextflow
      Python
      •11•1•0•0•Updated Jun 27, 2024Jun 27, 2024

    • macpepdb

      Public
      Python
      •3•4•0•0•Updated Feb 29, 2024Feb 29, 2024

    • macpepdb-web

      Public
      Vue
      •0•0•2•0•Updated Oct 18, 2023Oct 18, 2023

    • denbi_summerschool2023_py_exercises

      Public
      Python exercises for the de.NBI Summer School 2023
      Jupyter Notebook
      •0•0•1•0•Updated Oct 13, 2023Oct 13, 2023

    • QC_Quant

      Public
      Quality control for quantitative proteomics data
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • pia

      Public
      :books: :microscope: PIA - Protein Inference Algorithms
      Java
      •
      Other
      •8•1•0•0•Updated Aug 17, 2023Aug 17, 2023

    • pia-knime-nodes

      Public
      This repository holds the declaration for KNIME nodes to use PIA
      Java
      •6•0•0•0•Updated Jul 11, 2023Jul 11, 2023
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