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    17 repositories

    • do-dd-client

      Public
      Deep Origin CLI and Python client
      pythoncommand-linelife-sciences
      pythoncommand-linelife-sciencessciopsdeep-origin
      Python
      •
      MIT License
      •1•14•0•0•Updated Jul 30, 2026Jul 30, 2026

    • platform-crmq-simulator

      Public
      CRMQ Virtual Cluster Simulator
      TypeScript
      •0•0•0•5•Updated Jul 29, 2026Jul 29, 2026

    • .github

      Public
      Public profile of Formic Labs
      0•1•0•0•Updated Mar 10, 2026Mar 10, 2026

    • platform-ufa-client-tiny

      Public
      A tiny UFA client to use within Functions
      Python
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • rnd-agent-deepknowledge-pubmed-parser

      Public
      :clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
      Python
      •
      MIT License
      •182•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • do-events-challenge2025

      Public
      Python
      •1•2•0•0•Updated Apr 28, 2025Apr 28, 2025

    • do-publications-deep-thought

      Public
      0•6•0•0•Updated Apr 27, 2025Apr 27, 2025

    • do-publications-smartdatafactory-experiments

      Public
      Source code for Smart Distributed Data Factory ML models (see preprint. https://www.biorxiv.org/content/10.1101/2024.10.22.619651v2)
      Python
      •
      MIT License
      •1•2•0•10•Updated Mar 10, 2025Mar 10, 2025

    • usr-brian-fork-mathjs

      Public archive
      An extensive math library for JavaScript and Node.js
      JavaScript
      •
      Apache License 2.0
      •1.3k•0•0•5•Updated Oct 11, 2024Oct 11, 2024

    • do-tools-snakemake-executor-plugin

      Public archive
      A snakemake executor plugin for submission of jobs to Deeporigin
      Python
      •
      MIT License
      •15•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • do-tools-dna-seq-varlociraptor

      Public archive
      A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) …
      Python
      •
      MIT License
      •47•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • do-tools-snakemake-storage-plugin

      Public archive
      A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
      Python
      •
      MIT License
      •17•0•0•1•Updated Jun 14, 2024Jun 14, 2024

    • do-tools-rna-seq-star-deseq2

      Public archive
      RNA-seq workflow using STAR and DESeq2
      Python
      •
      MIT License
      •213•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • do-fork-stag-mwc

      Public archive
      StaG Metagenomic Workflow Collaboration
      Python
      •
      MIT License
      •13•0•0•0•Updated May 1, 2024May 1, 2024

    • do-fork-nf-shardold1

      Public archive
      Nextflow runs monitoring and organisation UI
      TypeScript
      •
      MIT License
      •14•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • do-fork-d2vm

      Public archive
      Build Virtual Machine Image from Dockerfile or Docker image
      Go
      •
      Apache License 2.0
      •62•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • do-fork-docker-to-linux

      Public archive
      Make bootable Linux disk image abusing Docker
      Makefile
      •97•0•0•0•Updated Jan 2, 2023Jan 2, 2023
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