Repositories list

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •77 forks•2121 stars•6161 issues•1111 pull requests•Updated Aug 18, 2026Aug 18, 2026

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  visualizationdatavizscrna-seq+ 2

  visualizationdatavizscrna-seqscientifictranscriptomics

  JavaScript

  •

  MIT License

  •157157 forks•784784 stars•135135 issues•44 pull requests•Updated Aug 18, 2026Aug 18, 2026

• camelot

  Public
  Go

  •

  MIT License

  •00 forks•11 star•00 issues•22 pull requests•Updated Aug 18, 2026Aug 18, 2026

• dataset-catalog

  Public
  Tooling and utilities to work with the dataset-catatlog

  Python

  •

  MIT License

  •11 fork•44 stars•22 issues•1313 pull requests•Updated Aug 17, 2026Aug 17, 2026

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •66 forks•77 stars•88 issues•1515 pull requests•Updated Aug 17, 2026Aug 17, 2026

• idetik

  Public
  TypeScript

  •

  MIT License

  •00 forks•1515 stars•5252 issues•33 pull requests•Updated Aug 17, 2026Aug 17, 2026

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •2424 forks•7070 stars•00 issues•22 pull requests•Updated Aug 17, 2026Aug 17, 2026

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  infrastructureterraforminfrastructure-as-code

  infrastructureterraforminfrastructure-as-code

  Go

  •

  MIT License

  •1919 forks•307307 stars•00 issues•22 pull requests•Updated Aug 17, 2026Aug 17, 2026

• blessclient

  Public
  Go client to negotiate SSH certificates

  sshcertificatersync+ 3

  sshcertificatersyncscpssh-agentczi

  Go

  •

  MIT License

  •1313 forks•6363 stars•88 issues•66 pull requests•Updated Aug 17, 2026Aug 17, 2026

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •66 forks•2121 stars•00 issues•77 pull requests•Updated Aug 17, 2026Aug 17, 2026

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •44 forks•77 stars•00 issues•1212 pull requests•Updated Aug 17, 2026Aug 17, 2026

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •1515 forks•9292 stars•252252 issues•1313 pull requests•Updated Aug 16, 2026Aug 16, 2026

• edu-design-system

  Public
  Design system for Learning Commons Projects

  reactdesign-systemstyle-dictionary

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •44 forks•3333 stars•11 issue•1212 pull requests•Updated Aug 14, 2026Aug 14, 2026

• dynamic-cell-atlas-specs

  Public
  Specification for data storage in the Dynamic Cell Atlas (DCA)

  Python

  •

  MIT License

  •11 fork•11 star•11 issue•11 pull request•Updated Aug 14, 2026Aug 14, 2026

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1

  reactcssthemedesign-system

  TypeScript

  •

  MIT License

  •77 forks•3535 stars•108108 issues•77 pull requests•Updated Aug 14, 2026Aug 14, 2026

• miniwdl

  Public
  Workflow Description Language developer tools & local runner

  wdlworkflow-description-language

  wdlworkflow-description-language

  Python

  •

  MIT License

  •6969 forks•206206 stars•120120 issues•1616 pull requests•Updated Aug 14, 2026Aug 14, 2026

• create-sds-app

  Public template
  Repo template for npx create-sds-app

  TypeScript

  •

  MIT License

  •11 fork•55 stars•00 issues•66 pull requests•Updated Aug 13, 2026Aug 13, 2026

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •3131 forks•5858 stars•2525 issues•1111 pull requests•Updated Aug 13, 2026Aug 13, 2026

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •1212 forks•3232 stars•251251 issues•1212 pull requests•Updated Aug 12, 2026Aug 12, 2026

• argus-artifacts

  Public
  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• homebrew-tap

  Public
  Ruby

  •22 forks•33 stars•22 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• argo-helm-charts

  Public
  Go Template

  •

  MIT License

  •00 forks•00 stars•00 issues•1212 pull requests•Updated Aug 11, 2026Aug 11, 2026

• py2rely

  Public
  Tools for Running Relion5 Sub-Tomogram Refinement Through CLI

  relioncryo-et

  relioncryo-et

  Python

  •

  Other

  •22 forks•88 stars•22 issues•11 pull request•Updated Aug 10, 2026Aug 10, 2026

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •11 fork•1010 stars•1111 issues•77 pull requests•Updated Aug 10, 2026Aug 10, 2026

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •33 forks•77 stars•00 issues•00 pull requests•Updated Aug 7, 2026Aug 7, 2026

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •2929 forks•129129 stars•113113 issues•1414 pull requests•Updated Aug 4, 2026Aug 4, 2026

• copick-server

  Public
  Python

  •22 forks•00 stars•00 issues•99 pull requests•Updated Jul 31, 2026Jul 31, 2026

• delta-share

  Public
  Go

  •

  MIT License

  •00 forks•11 star•00 issues•1515 pull requests•Updated Jul 31, 2026Jul 31, 2026

• ops-schema

  Public
  Cathy's schema

  Python

  •

  MIT License

  •00 forks•00 stars•44 issues•11 pull request•Updated Jul 21, 2026Jul 21, 2026

• alhazen

  Public
  AI agents + toolkits for scientific knowledge

  scientific-knowledge-engineeringlandscape-analysislarge-language-models

  scientific-knowledge-engineeringlandscape-analysislarge-language-models

  Jupyter Notebook

  •

  MIT License

  •33 forks•4242 stars•11 issue•44 pull requests•Updated Jul 17, 2026Jul 17, 2026