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    60 repositories

    • protein-feature-vectors

      Public
      Code to produce fixed-length feature vectors from protein sequences based on iFeatureOmega
      Python
      •0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • sLAM

      Public
      Code to create a GPT-2-style, decoder-only Small LAnguage Model
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 20, 2026Mar 20, 2026

    • dictionaryutils

      Public
      Python
      •
      Apache License 2.0
      •3•4•0•1•Updated Mar 18, 2026Mar 18, 2026

    • swift-jsonapi

      Public
      Effortless JSON:API encoding and decoding in Swift
      Swift
      •
      MIT License
      •1•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • dictionary-visualizer

      Public
      Stand-alone DD viewer for schema.json artifacts
      JavaScript
      •1•3•0•7•Updated Feb 4, 2026Feb 4, 2026

    • prql

      Public
      PRQL is a modern language for transforming data — a simple, powerful, pipelined SQL replacement
      Rust
      •
      Apache License 2.0
      •257•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • semantic-search-demo

      Public
      demo app of semantic search using embeddings vs keyword search
      HTML
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • drug-discovery-workflows-public-fork

      Public
      Python
      •
      MIT No Attribution
      •21•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • sphinx-documentation-demo

      Public
      Attempting to demo the capabilities of Sphinx documentation
      Python
      •1•0•0•0•Updated May 29, 2024May 29, 2024

    • ansible-playbook-perfsonar

      Public
      A master playbook for deploying perfSONAR infrastructure
      Shell
      •
      Apache License 2.0
      •8•0•0•0•Updated May 9, 2024May 9, 2024

    • storybook-addon-jsdoc-to-mdx

      Public
      Automatically generates MDX documentation from JSDoc comments for Storybook.
      TypeScript
      •
      MIT License
      •7•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • wf-transcriptomes

      Public
      Python
      •
      Other
      •50•0•0•0•Updated Jan 4, 2024Jan 4, 2024

    • etldev

      Public
      Python
      •1•0•1•0•Updated Sep 21, 2023Sep 21, 2023

    • DIYA

      Public
      Repository for DIYA code
      Perl
      •
      GNU General Public License v3.0
      •4•6•0•0•Updated Sep 7, 2023Sep 7, 2023

    • bioit-sharing-ml-notebooks

      Public
      Sharing notebooks for Bio-IT World Demo
      HTML
      •0•1•0•0•Updated May 16, 2023May 16, 2023

    • saml

      Public archive
      SAML library for go
      Go
      •
      BSD 2-Clause "Simplified" License
      •472•0•0•5•Updated Apr 10, 2023Apr 10, 2023

    • vqtomics

      Public
      A Vue.js UI for querying variants from Omics.
      Vue
      •
      MIT License
      •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • covid-bioinformatics

      Public
      Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs
      bioinformaticsalignmentsbed-files
      bioinformaticsalignmentsbed-fileshmmscovcoronaviruscovid-19covidcovid19sars-cov-2
      Python
      •
      Apache License 2.0
      •2•4•0•0•Updated Feb 8, 2023Feb 8, 2023

    • ct-gov

      Public
      Python
      •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • service-workbench-on-aws

      Public
      A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enab…
      JavaScript
      •
      Apache License 2.0
      •119•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • Bibliometrics

      Public
      Scripts to generate bibliometrics data and perform analysis
      Python
      •0•0•0•0•Updated Jul 13, 2022Jul 13, 2022

    • data-portal-2021.09

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated May 12, 2022May 12, 2022

    • gen3-ui-component

      Public
      Base UI component in gen3
      JavaScript
      •
      Apache License 2.0
      •3•0•0•0•Updated May 11, 2022May 11, 2022

    • cdis-manifest

      Public
      CSS
      •0•0•0•1•Updated May 11, 2022May 11, 2022

    • guppy

      Public
      Server that support GraphQL queries on data from elasticsearch
      JavaScript
      •
      Apache License 2.0
      •14•0•0•0•Updated Apr 28, 2022Apr 28, 2022

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      JavaScript
      •
      Apache License 2.0
      •59•0•0•0•Updated Apr 6, 2022Apr 6, 2022

    • secrets-store-csi-driver

      Public
      Secrets Store CSI driver for Kubernetes secrets - Integrates secrets stores with Kubernetes via a CSI volume.
      Go
      •
      Apache License 2.0
      •326•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • github-lnl-demo-2

      Public
      Python
      •2•0•0•0•Updated Nov 4, 2021Nov 4, 2021

    • hh-suite

      Public
      Remote protein homology detection suite.
      C
      •
      GNU General Public License v3.0
      •149•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • ML-Image-Segmentation

      Public
      Retinal OCT Image Segmentation for NEI OSIO Projects
      HTML
      •0•0•1•0•Updated Aug 27, 2021Aug 27, 2021
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