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@SGBC SLU Global Bioinformatics Centre

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    23 repositories

    • survey

      Public
      This is the curated version of the Open Data survey and Pigweb analysis. You can use this Rmarkdown template to
      HTML
      •
      GNU General Public License v3.0
      •13•2•5•1•Updated Oct 27, 2024Oct 27, 2024

    • weatherdata

      Public
      This project will integrate data from SLU Lantmet and SMHI for data analysis
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Mar 23, 2023Mar 23, 2023

    • capture

      Public
      the capture-seq assembler
      Python
      •
      MIT License
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • ENAbler

      Public
      programmatic ena submission (work in progress)
      Python
      •
      MIT License
      •0•0•0•6•Updated Dec 8, 2022Dec 8, 2022

    • kirk

      Public
      captain of the enterprise
      Python
      •
      MIT License
      •0•0•0•3•Updated Dec 8, 2022Dec 8, 2022

    • surveys-example

      Public
      Surveys host the R markdown code necessary to analyse surveys and compare results with the State of Open Data survey. The markdown book contain a large number o…
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2022May 9, 2022

    • breedmaps

      Public
      Later
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jan 11, 2022Jan 11, 2022

    • course

      Public
      Resources for our bioinformatics course
      Python
      •
      Creative Commons Attribution 4.0 International
      •3•4•6•5•Updated Jul 19, 2021Jul 19, 2021

    • DFdashboard

      Public
      A Dashboard providing farmers with a Dashboard accessing data from Gigacow
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • anigalaxy

      Public
      Developing a local Galaxy implementation for Animal science and genetics
      Shell
      •0•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • galaksio

      Public
      An easy-to-use way for running Galaxy workflows.
      dockerscienceworkflow
      dockerscienceworkflowbioinformaticsreproducible-researchngseasy-to-usegalaxyuser-friendlyworkflows
      JavaScript
      •
      GNU General Public License v3.0
      •7•20•26•0•Updated Nov 19, 2019Nov 19, 2019

    • Galaksio-py3

      Public
      A Python 3 version of Galaksio
      0•0•0•0•Updated Nov 15, 2019Nov 15, 2019

    • metagenome-binning

      Public
      Python
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Aug 26, 2019Aug 26, 2019

    • kronos

      Public
      the group's intranet
      Vue
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 31, 2018Oct 31, 2018

    • sgbc.slu.se

      Public
      the group website
      HTML
      •2•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • sge_scripts

      Public
      Repository to aggregate useful qsub scripts for our users
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 14, 2018May 14, 2018

    • app-galaksio

      Public
      1•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • useGalaksio

      Public
      Creating a website for generation of Galaksio demo websites.
      0•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • cluster_doc

      Public
      User documentation for our cluster
      websitedocumentationcluster
      websitedocumentationcluster
      0•1•0•0•Updated Nov 29, 2017Nov 29, 2017

    • BarcodeBonanza

      Public
      NextFlow workflows for managing 16S rRNA data using DADA2
      MIT License
      •0•0•0•0•Updated Nov 22, 2017Nov 22, 2017

    • metlab_tools

      Public
      automated build of various bioinformatics software
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 10, 2017Sep 10, 2017

    • tutorials

      Public
      :notebook_with_decorative_cover: Various bioinformatics tutorials
      Other
      •37•0•0•0•Updated Mar 28, 2017Mar 28, 2017

    • metlab

      Public
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Feb 28, 2017Feb 28, 2017
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