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Pull requests: ksahlin/strobealign

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Pull requests list

Concatenate the reference contigs into one "flat" reference
#607 opened Jun 30, 2026 by marcelm Collaborator Loading…
1
Compute single-end MAPQ score better by considering at least two mappings.
#600 opened Jun 11, 2026 by ksahlin Owner Loading…
Add repetitive hits that are close to non-repetitive hits with a linear sweep
#590 opened Jun 4, 2026 by ksahlin Owner Loading…
3
Re-arranged commits paired extension alignment PR
#584 opened May 5, 2026 by marcelm Collaborator • Draft
2 tasks done
Rename NAM to chain
#575 opened Mar 23, 2026 by marcelm Collaborator Loading…
1 task done
1
Perf optimizations
#566 opened Mar 3, 2026 by parlar Loading…
1
Non-canonical syncmers
#546 opened Jan 30, 2026 by marcelm Collaborator • Draft
1
better hamming check using scoring parameters
#518 opened Sep 16, 2025 by NicolasBuchin Collaborator Loading…
Only keeping strobemer matches with minimum strobes distance difference
#517 opened Sep 13, 2025 by NicolasBuchin Collaborator Loading…
1
Experiment: Use a bit in RefRandstrobe to indicate whether it is filtered
#466 opened Dec 4, 2024 by marcelm Collaborator Loading…
3
Use ksw2 to align soft-clipped ends from ungapped alignment
#382 opened Dec 17, 2023 by marcelm Collaborator Loading…
1
7
ProTip! What’s not been updated in a month: updated:<2026-06-06.