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Pull requests: gc-os-ai/pyaptamer

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Pull requests list

[MNT] Fix BaseTransform abstract method exception types and add missing module-level attributes
#637 opened May 3, 2026 by Ishiezz Loading…
2 tasks done
1
[BUG] Fix/issue 550 lowercase protein seq
#635 opened May 3, 2026 by adt-kmr Loading…
[BUG] Benchmarking._to_scorers() silently drops duplicate metric names
#634 opened May 3, 2026 by direkkakkar319-ops Contributor Loading…
3 tasks done
[DOC] Add Jupyter Notebook Tutorial for sktime Benchmarking
#633 opened May 2, 2026 by pranavchoudhary-tech Loading…
1
[BUG] Fix GreedyEncoder crash and silent failure on empty words dict
#632 opened May 2, 2026 by Ishiezz Loading…
3 tasks done
1
[BUG] Fix filter_words RuntimeWarning on empty input
#630 opened May 2, 2026 by Ishiezz Loading…
3 tasks done
1
ENH: Move pairs_to_features and generate_kmer_vecs to transformer interface (#174)
#628 opened May 2, 2026 by DashratRajpurohit Loading…
1
[ENH] Add from_dataframe factory method to APIDataset
#627 opened May 2, 2026 by Vaishnav88sk Loading…
4 tasks done
1
[ENH] Add standard deviation columns to Benchmarking results
#626 opened May 2, 2026 by Vaishnav88sk Loading…
5 tasks done
1
[ENH] Add validate_sequence utility for DNA/RNA/protein input validation
#625 opened May 2, 2026 by Vaishnav88sk Loading…
5 tasks done
1
[BUG] Fix MCTS.run() docstring and add __repr__ for inspectability
#624 opened May 2, 2026 by Vaishnav88sk Loading…
5 tasks done
1
[ENH] Add augment_complement for RNA/DNA reverse complement augmentation
#623 opened May 2, 2026 by Vaishnav88sk Loading…
5 tasks done
1
[BUG] Fix encode_rna docstring terminology and add return_type validation
#617 opened May 1, 2026 by Ishiezz Loading…
3 tasks done
1
AptaTrans: add FCSWordTransformer and reproduction test
#615 opened May 1, 2026 by archittmittal Loading…
[BUG] fix: dynamic normalization in aa_props and correct prop_indices interaction
#614 opened May 1, 2026 by DZDasherKTB Loading…
1
[CRASH] Fix: add ValueError for invalid encoder_type and None input_dim
#612 opened May 1, 2026 by DZDasherKTB Loading…
2
fix: PositionalEncoding Shape Mismatch on Odd Dimensions
#609 opened May 1, 2026 by agam263 Loading…
1
1
fix: rna2vec case-insensitivity for secondary structures
#608 opened May 1, 2026 by agam263 Loading…
1
fix: make GreedyEncoder.get_test_params a classmethod
#603 opened Apr 30, 2026 by AbinaShah Loading…
1
2
[BUG] Fix GreedyEncoder.get_test_params classmethod invocation
#602 opened Apr 30, 2026 by Adithyaphani Loading…
1
1
[BUG] Fix masked targets to respect provided labels
#600 opened Apr 30, 2026 by blenbot Loading…
2 of 3 tasks
1
# [ENH] Improve Benchmarking API: reusability, metric support, and estimator handling
#598 opened Apr 30, 2026 by Abhishekhack2909 Loading…
1
[FIX]: Resolve training crash due to BCE loss shape mismatch
#597 opened Apr 30, 2026 by agam263 Loading…
1
Fix rna utils robustness
#595 opened Apr 30, 2026 by agam263 Loading…
3 tasks done
1
Fix rna masking padding
#593 opened Apr 30, 2026 by agam263 Loading…
4 tasks done
1
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