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All reconstruction steps should default to partition=preempted

Status: Open.

#245 In czbiohub-sf/biahub;

· ieivanov opened on Apr 29, 2026

Audit ram_multiplier in estimate_resources for each recon step (post #215)

Status: Open.

#243 In czbiohub-sf/biahub;

· ieivanov opened on Apr 26, 2026

Preserve zarr version during reconstruction

Status: Open.

#240 In czbiohub-sf/biahub;

· ieivanov opened on Apr 22, 2026

Add viscy as dependency

Status: Open.

#237 In czbiohub-sf/biahub;

· ieivanov opened on Apr 16, 2026

Phase 1 biahub refactor: Merge outstanding PRs and switch to uv scaffolding

Status: Open.

#235 In czbiohub-sf/biahub;

· ieivanov opened on Apr 16, 2026

viscy writes data in XY slices rather than XYZ chunks

Status: Open.

#234 In czbiohub-sf/biahub;

· ieivanov opened on Apr 16, 2026

waveorder reconstructions don't terminate properly

Status: Open.

#233 In czbiohub-sf/biahub;

· ieivanov opened on Apr 15, 2026

Add Hydra pipeline CLI and config templates

Status: Open.

#229 In czbiohub-sf/biahub;

· ieivanov opened on Apr 10, 2026

Migrate biahub to uv workspace with independent subpackages

Status: Open.

#228 In czbiohub-sf/biahub;

· ieivanov opened on Apr 7, 2026

Include main biahub API method in __init__.py __all__ for easy import

Status: Open.

#227 In czbiohub-sf/biahub;

· ieivanov opened on Apr 7, 2026

Unified registration/stabilization architecture with method registry

Status: Open.

#219 In czbiohub-sf/biahub;

· tayllatheodoro opened on Mar 18, 2026

concatenate pollutes stdout by repetitively printing channel indices

Status: Open.

#210 In czbiohub-sf/biahub;

· alxndrkalinin opened on Mar 5, 2026