napari-rtv

Conda

Installation

git clone https://github.com/abcucberkeley/napari-rtv
cd napari-rtv
conda env create -f environment.yaml
conda activate napari-rtv

Usage

You can call the napari_gui.py script from the napari-rtv folder

Run the GUI

python napari_rtv_gui.py

You can call the napari_rtv.py script from the napari-rtv folder if you prefer to use the cli version directly

Monitor a single folder and channel pattern

python napari_rtv.py --folder-paths /path/to/folder1 --channel-patterns pattern1 --voxel-resolution 108,108,108

Monitor multiple folders and channel patterns

python napari_rtv.py --folder-paths /path/to/folder1,/path/to/folder2 --channel-patterns pattern1,pattern2 --voxel-resolution 108,108,108

Monitor a single folder and channel pattern with a maximum amount of timepoints (latest timepoints will be used)

python napari_rtv.py --folder-paths /path/to/folder1 --channel-patterns pattern1 --voxel-resolution 108,108,108 --max-timepoints 2