radius-r3

What's Changed

• Fix concurrency problem in SharedTable by @mdoube in #416
• Improve Connectivity's relationship with Datasets and ImagePlus by @mdoube in #418
• XamFlow integration for Connectivity by @mdoube in #420
• XamFlow Particle Analyser integration by @mdoube in #422
• Expose the topology-tagged image and the tree labelled image by @mdoube in #424
• Load and save 2D as well as 3D images by @mdoube in #427
• Save BitType images to RAW by @mdoube in #429

Full Changelog: bonej-7.2.1...bonej-7.2.2

radius-r1

What's Changed

• Target Java 11 code compatibility by @mdoube in #408
• XamFlow integration by @mdoube in #411
• 409 xamflow integration by @mdoube in #413
• Fix mockito config and update CI configuration by @ctrueden in #414

Provide a RAW <-> Dataset utility class that may be used by XamFlow Task Jython scripts to load and save raw data to/from ImageJ Dataset.

Full Changelog: bonej-7.2.0...bonej-7.2.1

radius-r0

Harmonise IO among all the plugins, Legacy, Modern and Plus, to use Dataset for image IO and the BoneJ results SharedTable for numerical results. Internal processing remains the same, using ImgPlus or ImagePlus via the ConvertService.convert() functions to convert to/from Dataset.

Users of BoneJ's API via Python will need to update their code or stay on a pre radius release (ulna or earlier).

What's Changed

• 397 modern table by @mdoube in #398
• Hybridise the legacy plugins by @mdoube in #400
• Update build-main.yml by @mdoube in #404
• Update build-main.yml by @mdoube in #405
• Use Datasets for IO by @mdoube in #406

Full Changelog: bonej-7.1.10...bonej-7.2.0

ulna-r10

What's Changed

• Fix POM issues by @ctrueden in #390
• Area / Volume Fraction - Use ROIs from the IJ1 ROI Manager by @mdoube in #394
• Enforce the presence of an xy plane in the image. by @mdoube in #395

Full Changelog: bonej-7.1.9...bonej-7.1.10

ulna-r9

What's Changed

• use bonej-plus 0.0.12 by @mdoube in #386
• use mockito 5.20.0 by @mdoube in #387
• Remove beancounter and bonej-plus repos as they are not dependencies by @mdoube in #388

Put all the bonej-plus GPU things and beancounter licensing things together and out of BoneJ2

Full Changelog: bonej-7.1.8...bonej-7.1.9

ulna-r8

What's Changed

• use bonej-plus-0.0.11 by @mdoube in #384

performance improvement for ridgepoint template creation

Full Changelog: bonej-7.1.7...bonej-7.1.8

ulna-r7

What's Changed

• Use bonej-plus-0.0.10 by @mdoube in #382
• Change 'spacing' to 'separation' for Tb.Sp in Thickness plugin.

Full Changelog: bonej-7.1.6...bonej-7.1.7

ulna-r6

Use bonej-plus-0.0.9 which introduces GPU-accelerated anisotropy measurement by the mean intercept length method.

What's Changed

• Use bonej-plus-0.0.9 by @mdoube in #381

Full Changelog: bonej-7.1.5...bonej-7.1.6

ulna-r5

What's Changed

• Use bonej-plus-0.0.8 by @mdoube in #379

This drops the OpenCL compliance level to version 1.2 which is much more broadly supported than the previously-targeted 2.0. Notably, Intel devices can now run BoneJ+ plugins. Ellipsoid Factor+ runs 1.5-3x faster, depending on hardware.

Full Changelog: bonej-7.1.4...bonej-7.1.5

ulna-r4

What's Changed

• Use bonej-plus-0.0.7 by @mdoube in #377

Adds Skeletonize 3D+ to user menu and GPU based medial axis thinning for seed points for Ellipsoid Factor+

Full Changelog: bonej-7.1.3...bonej-7.1.4