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Replicate processing gives 4 preps (due to demux_sample_sheet behavior)

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#363 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 29, 2026

Implement local/CI stable test of iseqnormpool picklist contents for metaT notebook

Status: Open.

#354 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 7, 2026

Refactor to remove duplicated sample_name to sample_id scrubbing logic

Status: Open.

#344 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 5, 2025

Fix dependence on Illumina (only) file name format to determine sample name

Status: Open.

#341 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 3, 2025

Write tests for/add NaN handling of dataframe input case of metapool.format_pooling_echo_pick_list()

bugSomething isn't workingSomething isn't working

Status: Open.

#340 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 1, 2025

Refactor scripts (seqpro, seqpro_mf) and supporting classes into qp-klp

Status: Open.

#335 In biocore/kl-metapool;

· AmandaBirmingham opened on Sep 10, 2025

Add replicate support for metatranscriptomics

Status: Open.

#324 In biocore/kl-metapool;

· AmandaBirmingham opened on Aug 27, 2025

Centralize manipulation of de-replicated dataframe to PlateReplication

enhancementNew feature or requestNew feature or request

Status: Open.

#321 In biocore/kl-metapool;

· AmandaBirmingham opened on Aug 1, 2025

Missing required sample sheet columns are filled in blank without triggering an error

Status: Open.

#305 In biocore/kl-metapool;

· AmandaBirmingham opened on Jun 13, 2025

Duplication of sample sheet field names in prep module

Status: Open.

#303 In biocore/kl-metapool;

· AmandaBirmingham opened on Jun 13, 2025

Consolidate files to be either txt or csv.

Status: Open.

#285 In biocore/kl-metapool;

· antgonza opened on Apr 3, 2025

Centralize or copy shared current metaG matrix tube functionality into amplicon notebook

Status: Open.

#274 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 13, 2025