Open
Conversation
ReSeq2 is a maintained continuation of ReSeq (Schmeing & Robinson, Genome Biology 2021) — a realistic Illumina paired-end sequencing simulator. It learns error, quality, and coverage profiles from real data and uses them to generate synthetic reads. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Fix pthread linkage for Bioconda build environment (GCC 14.3). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Author
|
@BiocondaBot please add label |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
Add new recipe for reseq2 v2.0.1 — a realistic Illumina paired-end sequencing simulator.
ReSeq2 is a maintained continuation of ReSeq (Schmeing & Robinson, Genome Biology 2021). It learns error, quality, and coverage profiles from real Illumina paired-end data and uses them to simulate synthetic reads with matching k-mer spectra.
Changes from upstream ReSeq:
convertProfilecommand)Repository: https://github.com/berntpopp/ReSeq2
License: MIT
Platform: Linux only
Test