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FNNDSC / ChRIS_ultron_backEnd Public

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Rudolph Pienaar edited this page Mar 31, 2017 · 6 revisions

Welcome to the ChRIS_ultron_backEnd wiki!

Refer to the pages on the right for more information / setup / usage / etc.

Wiki pages Pages 40

Home
- Welcome to the ChRIS_ultron_backEnd wiki!
0. ChRIS preliminary workflow: intro
1.1 ChRIS FS plugin workflow: upload files to CUBE and create a new top level feed (pl dircopy)
1.2 ChRIS FS plugin workflow: upload files to CUBE and create a new top level feed (pl pacscopy)
2.1 ChRIS DS plugin workflow: anonymize DICOM images.
2.2 ChRIS DS plugin workflow: convert DICOM to jpg and invert image intensities.
2.3 ChRIS DS plugin workflow: extract DICOM metadata.
2.4 ChRIS FS DS DS plugin worflow: simulate a FreeSurfer MPC heatmap workflow
2.4.1 ChRIS FS DS DS plugin worflow summary
2.4.2 ChRIS FS DS DS plugin worflow summary [moc]
3. ChRIS plugin PACS query workflow
4. ChRIS plugin PACS retrieve workflow
5. ChRIS plugin geretrieve
6. ChRIS workflow: run prostate imaging segmenter
[HOW TO] Create a new ChRIS user account through the ChRIS API
[HOW TO] Register a compute resource via the REST API
[HOW TO] Register a plugin via Django dashboard
[HOW TO] Register a plugin via the REST API
[HOW TO] Use file download tokens through the ChRIS API
Admin workflow
ChRIS backend database design
ChRIS backend production services secret configuration files
ChRIS REST API design
ChRIS REST API Reference
Chris workflow
CUBE Development directly on the metal
Debugging
Debugging CUBE Containerized Services
Debugging CUBE pacsquery and pacsretrieve without containers
Debugging CUBE Services without Containers
Deployment
FastSurfer Workflow
Fedora 32 Support for Docker
MICCAI Work Flow (WIP)
PACS Pull Details
PACS Pull wokflow
Prune orphaned plugin instance files
Storage Backends
Vagrant Setup OSX
Workflow notes

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