Analyze data taken from TrackStim (and potentially other worm recordings)
- Install anaconda
- Create the conda environment from for windows/mac
conda create --name behaviour-analysis --file conda_req_windows.txt
conda create --name behaviour-analysis --file conda_req_mac.txt
- Fix tierpsy issues
- Find all instances of
cv2.findContours() - Delete the first return value in the multi-return assignment so that
cv2.findContours()only returns 2 values
This requires everything that tierpsy has, with some additions:
- pandas needs to be 0.25.1
- seaborn
- scikit-image
- networkx
- tifffile
TODO