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Alexclaude
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Add build effort analysis script and reports
Leverages charm project's contribution tracking patterns to analyze medgemma_competition build effort: - Python script parsing git log with --numstat for per-file line counts - Contributor normalization (4 git names -> 2 people) - Phase breakdown (Research+Scaffold, Core Integration, Hardening, Demo) - Per-crate and per-contributor stats - Claude session analysis (8 sessions, 58.7 hours, 12.8k messages) - Outputs: BUILD_EFFORT_REPORT.md and BUILD_EFFORT_CR.csv (charm CR-sheet format) Results: 171 commits over 9 days, 10 person-days, +149k/-20k lines Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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‎BUILD_EFFORT_CR.csv‎

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,,,,,,,,,
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,Build Effort Analysis:,,,,,,,,
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,,,,Total,,Work to Date,,Remaining Work,
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,Work item,Description,Contributor,Days,Cost,Days,Cost,Days,Cost
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,,,,,,,,,
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, Phase 1: Research + Scaffold (2026-02-16 to 2026-02-17),,,,,,,,
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,,,,,,,,,
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,terraphim-automata,Aho-Corasick entity extraction (1.4M SNOMED/UMLS patterns),Alex Mikhalev,0.4,0,0.4,0,0,0
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,terraphim-pgx,CPIC pharmacogenomic safety module,Alex Mikhalev,0.3,0,0.3,0,0,0
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,terraphim-api,Axum REST API server,Alex Mikhalev,0.2,0,0.2,0,0,0
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,medgemma-client,MedGemma 4B GGUF LLM inference wrapper,Alex Mikhalev,0.3,0,0.3,0,0,0
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,terraphim-demo,Interactive demo UI,Alex Mikhalev,0.3,0,0.3,0,0,0
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,terraphim-medical-agents,OTP-style multi-agent supervision,Alex Mikhalev,0.5,0,0.5,0,0,0
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,terraphim-evaluation,18-case 3-gate evaluation harness,Alex Mikhalev,0.1,0,0.1,0,0,0
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,docs,Documentation and writeups,,0.9,0,0.9,0,0,0
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,root,"Workspace config, Makefile, CI",,0.8,0,0.8,0,0,0
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,Phase Subtotal,,,3.8,0,3.8,0,0,0
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,,,,,,,,,
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, Phase 2: Core Integration (2026-02-18 to 2026-02-20),,,,,,,,
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,,,,,,,,,
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,terraphim-automata,Aho-Corasick entity extraction (1.4M SNOMED/UMLS patterns),Alex Mikhalev,0.6,0,0.6,0,0,0
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,medgemma-client,MedGemma 4B GGUF LLM inference wrapper,Alex Mikhalev,0.6,0,0.6,0,0,0
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,terraphim-demo,Interactive demo UI,Alex Mikhalev,0.2,0,0.2,0,0,0
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,terraphim-medical-agents,OTP-style multi-agent supervision,Alex Mikhalev,0.2,0,0.2,0,0,0
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,docs,Documentation and writeups,,2.1,0,2.1,0,0,0
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,root,"Workspace config, Makefile, CI",,1.5,0,1.5,0,0,0
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,Phase Subtotal,,,5.2,0,5.2,0,0,0
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,,,,,,,,,
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, Phase 3: Hardening + Validation (2026-02-21 to 2026-02-22),,,,,,,,
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,,,,,,,,,
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,terraphim-automata,Aho-Corasick entity extraction (1.4M SNOMED/UMLS patterns),Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-pgx,CPIC pharmacogenomic safety module,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-api,Axum REST API server,Alex Mikhalev,0.1,0,0.1,0,0,0
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,medgemma-client,MedGemma 4B GGUF LLM inference wrapper,Alex Mikhalev,0.2,0,0.2,0,0,0
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,terraphim-demo,Interactive demo UI,Alex Mikhalev,0.2,0,0.2,0,0,0
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,terraphim-medical-agents,OTP-style multi-agent supervision,Alex Mikhalev,0.5,0,0.5,0,0,0
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,terraphim-evaluation,18-case 3-gate evaluation harness,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-thesaurus,Medical terminology synonym expansion,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-medical-learning,Case-based learning and recommendations,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-medical-roles,Specialist role definitions,Alex Mikhalev,0.1,0,0.1,0,0,0
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,scripts,Build/deploy/download scripts,,0.2,0,0.2,0,0,0
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,docs,Documentation and writeups,,0.8,0,0.8,0,0,0
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,root,"Workspace config, Makefile, CI",,0.5,0,0.5,0,0,0
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,Phase Subtotal,,,3.1,0,3.1,0,0,0
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,,,,,,,,,
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, Phase 4: Demo + Submission (2026-02-23 to 2026-02-24),,,,,,,,
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,,,,,,,,,
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,terraphim-automata,Aho-Corasick entity extraction (1.4M SNOMED/UMLS patterns),Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-pgx,CPIC pharmacogenomic safety module,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-api,Axum REST API server,Alex Mikhalev,0.2,0,0.2,0,0,0
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,medgemma-client,MedGemma 4B GGUF LLM inference wrapper,Alex Mikhalev,0.2,0,0.2,0,0,0
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,terraphim-demo,Interactive demo UI,Alex Mikhalev,0.2,0,0.2,0,0,0
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,terraphim-medical-agents,OTP-style multi-agent supervision,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-evaluation,18-case 3-gate evaluation harness,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-thesaurus,Medical terminology synonym expansion,Alex Mikhalev,0.1,0,0.1,0,0,0
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,terraphim-medical-roles,Specialist role definitions,Alex Mikhalev,0.0,0,0.0,0,0,0
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,scripts,Build/deploy/download scripts,,0.1,0,0.1,0,0,0
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,docs,Documentation and writeups,,1.0,0,1.0,0,0,0
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,root,"Workspace config, Makefile, CI",,1.1,0,1.1,0,0,0
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,Phase Subtotal,,,3.3,0,3.3,0,0,0
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,,,,,,,,,
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,TOTAL,,,15.4,0,15.4,0,0,0

‎BUILD_EFFORT_REPORT.md‎

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# MedGemma Competition -- Build Effort Analysis
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## Summary
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| Metric | Value |
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|--------|-------|
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| Project duration | 9 days (2026-02-16 to 2026-02-24) |
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| Total commits | 171 |
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| Total person-days | 10 (Alex Mikhalev: 9, Kimiko (AI Agent): 1) |
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| Lines added | +149,255 |
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| Lines removed | -19,858 |
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| Net lines | 129,397 |
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| Workspace crates | 10 |
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| Contributors | 2 |
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## Timeline (Commits per Day)
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| Date | Commits | Lines +/- | Contributors | Phase |
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|------|---------|-----------|-------------|-------|
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| 2026-02-16 | 1 | +2,827/-0 | Alex Mikhalev | Phase 1: Research + Scaffold |
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| 2026-02-17 | 30 | +53,978/-2,775 | Alex Mikhalev | Phase 1: Research + Scaffold |
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| 2026-02-18 | 2 | +13,604/-194 | Alex Mikhalev | Phase 2: Core Integration |
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| 2026-02-19 | 1 | +4,699/-4 | Alex Mikhalev | Phase 2: Core Integration |
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| 2026-02-20 | 13 | +6,477/-688 | Alex Mikhalev | Phase 2: Core Integration |
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| 2026-02-21 | 31 | +21,044/-1,351 | Alex Mikhalev | Phase 3: Hardening + Validation |
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| 2026-02-22 | 33 | +18,748/-10,654 | Alex Mikhalev, Kimiko (AI Agent) | Phase 3: Hardening + Validation |
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| 2026-02-23 | 36 | +14,329/-2,594 | Alex Mikhalev | Phase 4: Demo + Submission |
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| 2026-02-24 | 24 | +13,549/-1,598 | Alex Mikhalev | Phase 4: Demo + Submission |
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## Phase Breakdown
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### Phase 1: Research + Scaffold (2026-02-16 to 2026-02-17)
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- **Active days**: 2
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- **Commits**: 31
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- **Lines**: +56,805/-2,775
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- **Contributors**: Alex Mikhalev
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- **Crates touched**: medgemma-client, terraphim-api, terraphim-automata, terraphim-demo, terraphim-evaluation, terraphim-medical-agents, terraphim-pgx
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- **Commit types**: feat:17, fix:6, docs:5, other:2, refactor:1
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### Phase 2: Core Integration (2026-02-18 to 2026-02-20)
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- **Active days**: 3
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- **Commits**: 16
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- **Lines**: +24,780/-886
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- **Contributors**: Alex Mikhalev
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- **Crates touched**: medgemma-client, terraphim-automata, terraphim-demo, terraphim-medical-agents
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- **Commit types**: feat:7, docs:6, chore:1, refactor:1, other:1
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### Phase 3: Hardening + Validation (2026-02-21 to 2026-02-22)
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- **Active days**: 2
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- **Commits**: 64
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- **Lines**: +39,792/-12,005
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- **Contributors**: Alex Mikhalev, Kimiko (AI Agent)
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- **Crates touched**: medgemma-client, terraphim-api, terraphim-automata, terraphim-demo, terraphim-evaluation, terraphim-medical-agents, terraphim-medical-learning, terraphim-medical-roles, terraphim-pgx, terraphim-thesaurus
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- **Commit types**: feat:35, docs:15, fix:8, chore:3, perf:1, other:1, refactor:1
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### Phase 4: Demo + Submission (2026-02-23 to 2026-02-24)
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- **Active days**: 2
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- **Commits**: 60
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- **Lines**: +27,878/-4,192
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- **Contributors**: Alex Mikhalev
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- **Crates touched**: medgemma-client, terraphim-api, terraphim-automata, terraphim-demo, terraphim-evaluation, terraphim-medical-agents, terraphim-medical-roles, terraphim-pgx, terraphim-thesaurus
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- **Commit types**: docs:25, feat:15, fix:9, chore:3, refactor:2, other:2, test:2, perf:1, style:1
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## Per-Crate Breakdown
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| Crate | Commits | Lines +/- | Contributors | First | Last |
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|-------|---------|-----------|-------------|-------|------|
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| terraphim-automata | 16 | +3,166/-225 | Alex Mikhalev | 2026-02-17 | 2026-02-23 |
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| terraphim-pgx | 11 | +1,955/-39 | Alex Mikhalev | 2026-02-17 | 2026-02-23 |
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| terraphim-api | 12 | +2,375/-344 | Alex Mikhalev | 2026-02-17 | 2026-02-24 |
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| medgemma-client | 19 | +5,743/-1,256 | Alex Mikhalev | 2026-02-17 | 2026-02-23 |
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| terraphim-demo | 19 | +5,426/-930 | Alex Mikhalev | 2026-02-17 | 2026-02-24 |
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| terraphim-medical-agents | 28 | +21,093/-4,974 | Alex Mikhalev | 2026-02-17 | 2026-02-24 |
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| terraphim-evaluation | 9 | +1,732/-84 | Alex Mikhalev | 2026-02-17 | 2026-02-24 |
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| terraphim-thesaurus | 5 | +1,588/-35 | Alex Mikhalev | 2026-02-21 | 2026-02-23 |
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| terraphim-medical-learning | 3 | +1,890/-117 | Alex Mikhalev | 2026-02-21 | 2026-02-21 |
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| terraphim-medical-roles | 4 | +935/-5 | Alex Mikhalev | 2026-02-21 | 2026-02-23 |
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| scripts | 11 | +2,164/-1 | Alex Mikhalev | 2026-02-21 | 2026-02-23 |
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| docs | 78 | +45,708/-4,464 | Alex Mikhalev, Kimiko (AI Agent) | 2026-02-16 | 2026-02-24 |
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| root | 71 | +49,195/-1,125 | Alex Mikhalev | 2026-02-16 | 2026-02-24 |
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## Contributor Analysis
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| Contributor | Commits | Person-days | Lines +/- | Primary Focus |
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|------------|---------|-------------|-----------|---------------|
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| Alex Mikhalev | 170 | 9 | +148,922/-19,827 | terraphim-medical-agents, medgemma-client, terraphim-demo |
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| Kimiko (AI Agent) | 1 | 1 | +333/-31 | general |
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## Commit Type Distribution
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| Type | Count | Percentage |
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|------|-------|-----------|
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| feat | 74 | 43.3% |
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| docs | 51 | 29.8% |
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| fix | 23 | 13.5% |
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| chore | 7 | 4.1% |
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| other | 6 | 3.5% |
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| refactor | 5 | 2.9% |
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| test | 2 | 1.2% |
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| perf | 2 | 1.2% |
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| style | 1 | 0.6% |
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## AI Agent Contribution (Claude Code Sessions)
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- **Sessions**: 8
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- **Total session hours**: 58.7
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- **Total messages**: 12,875
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- **Tool invocations**: 3,229
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| Session | Duration (h) | Messages | Tool Uses |
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|---------|-------------|----------|-----------|
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| be1828ef-d6d7-4a... | 41.7 | 380 | 214 |
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| cb0adef1-d58c-4d... | 8.9 | 4,914 | 920 |
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| 862215cd-d4cc-4b... | 2.4 | 4,322 | 1,084 |
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| a560f914-ff9f-4d... | 2.1 | 250 | 190 |
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| 407df49f-285d-46... | 1.3 | 266 | 215 |
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| 0d3ca95d-dfd1-4e... | 1.1 | 93 | 66 |
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| b2c0c2d8-91b1-40... | 0.8 | 2,171 | 194 |
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| b428d8da-a6d8-47... | 0.4 | 479 | 346 |
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## Effort Estimation (Person-Days)
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| Phase | Person-Days | Commits | Crates Touched |
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|-------|------------|---------|----------------|
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| Phase 1: Research + Scaffold | 2 | 31 | 7 |
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| Phase 2: Core Integration | 3 | 16 | 4 |
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| Phase 3: Hardening + Validation | 3 | 64 | 10 |
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| Phase 4: Demo + Submission | 2 | 60 | 9 |
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| **TOTAL** | **10** | **171** | |
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---
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*Generated on 2026-02-25 16:57 UTC*

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