OpenFLASH/dvc.lock at main · symbiotic-engineering/OpenFLASH · GitHub

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schema: '2.0'
stages:
  _check-env-tex:
    cmd: calkit check environment --name tex
    outs:
    - path: .calkit/env-locks/tex.json
      hash: md5
      md5: 7d20d92e324dcba892eb9ce1db612b65
      size: 1171
  _check-env-jfm:
    cmd: calkit check environment --name jfm
    deps:
    - path: requirements.txt
      hash: md5
      md5: cc46be4d0ecf84eb0737bc6dc0e78d20
      size: 460
    outs:
    - path: .calkit/env-locks/jfm.txt
      hash: md5
      md5: da2778aa10b978a61b883bae86c4a4d3
      size: 3330
  compile-overleaf:
    cmd: calkit latex build -e tex --no-check pubs/JFM/FLMguide.tex
    deps:
    - path: .calkit/env-locks/tex
      hash: md5
      md5: 1d20723629fc752e4776c7e1d6cb328e.dir
      size: 1147
      nfiles: 1
    - path: pubs/JFM/FLMguide.tex
      hash: md5
      md5: b18ab48f6a2a2b07053d9fad57307dfa
      size: 159245
    - path: pubs/JFM/FLMguide.tex
      hash: md5
      md5: b18ab48f6a2a2b07053d9fad57307dfa
      size: 159245
    - path: pubs/JFM/JFM-FLM_Au.cls
      hash: md5
      md5: 3c186eafc5523bfaca542e040d306b68
      size: 77883
    - path: pubs/JFM/becca-zotero-refs.bib
      hash: md5
      md5: ca032cb4dff2bd7bdd1e3b00011f132c
      size: 3942
    - path: pubs/JFM/figs/
      hash: md5
      md5: 946c4054a6e3f57f6370510717616bb1.dir
      size: 3030216
      nfiles: 30
    - path: pubs/JFM/jfm-appendix.tex
      hash: md5
      md5: 52770e0cffdb81b9601fd8a08032dd55
      size: 29074
    - path: pubs/JFM/jfm.bib
      hash: md5
      md5: 94debb13be1e536dfceb909122f78e97
      size: 4097
    - path: pubs/JFM/jfm.bst
      hash: md5
      md5: 87ba130f623ab9634524ef0699935c72
      size: 32331
    - path: pubs/JFM/lineno-FLM.sty
      hash: md5
      md5: 99c3d5a9f0bdda44e752563df250e3ed
      size: 3554
    - path: pubs/JFM/zotero-meem-refs.bib
      hash: md5
      md5: bc6c3e5ccad23eb982ab6cbe77119cf3
      size: 47692
    outs:
    - path: pubs/JFM/FLMguide.pdf
      hash: md5
      md5: 8a85411ba9f03859b8c4a6fd6079f03e
      size: 1471009
  validate-w-capy:
    cmd: calkit nb execute --environment openflash-on-branch --no-check --to
      html "analysis/validation_with_capytaine_plots.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-branch
      hash: md5
      md5: 6fee7550c7f8d298fc987043523e190e.dir
      size: 9764
      nfiles: 1
    - path:
        .calkit/notebooks/cleaned/analysis/validation_with_capytaine_plots.ipynb
      hash: md5
      md5: cb24277a46743be663ca11d97c5ccc66
      size: 29270
    outs:
    - path:
        .calkit/notebooks/executed/analysis/validation_with_capytaine_plots.ipynb
      hash: md5
      md5: f5d56751fbddd58583df31cab8f4fe56
      size: 874326
    - path: .calkit/notebooks/html/analysis/validation_with_capytaine_plots.html
      hash: md5
      md5: db1b9525ad6d75cd4bd6742934de5917
      size: 1191408
    - path: pubs/JFM/figs/MEEM_vs_Capytaine_Nonslant_Validation.pdf
      hash: md5
      md5: ac37fee7716bda0ff7e4f4cb62823d2a
      size: 167991
  _check-env-openflash-on-branch:
    cmd: calkit check environment --name openflash-on-branch
    deps:
    - path: analysis/environment-branch.yml
      hash: md5
      md5: c483fabbdc8ffe3d9126b77eca752f0b
      size: 255
    outs:
    - path: .calkit/env-locks/openflash-on-branch.yml
      hash: md5
      md5: f1dfdcd98f3c3fcb7e3f79cae2c329cf
      size: 7182
  _check-env-openflash-on-main:
    cmd: calkit check environment --name openflash-on-main
    deps:
    - path: analysis/environment-main.yml
      hash: md5
      md5: be30dd1fe7f71dcf12c451da84f31e66
      size: 112
    outs:
    - path: .calkit/env-locks/openflash-on-main.yml
      hash: md5
      md5: 21ba2764e53d15309ea5638bda293f96
      size: 7080
  generate-figs:
    cmd: calkit xenv -n openflash-on-main --no-check -- python
      analysis/make_fig.py
    deps:
    - path: .calkit/env-locks/openflash-on-main
      hash: md5
      md5: 66f6a19c3ce44de1c47e3b6f6f466061.dir
      size: 16386
      nfiles: 2
    - path: analysis/make_fig.py
      hash: md5
      md5: 342457a14ecf071e569ed77bc9b70d5e
      size: 199
    - path: package/src/
      hash: md5
      md5: 9592fc7c554a97cfc81d743ddea416b1.dir
      size: 554713
      nfiles: 51
    outs:
    - path: pubs/JFM/figs/sample_plot.png
      hash: md5
      md5: d974aa29cc09cc14918684f48873dda3
      size: 25165
  _clean-nb-validate-w-capy:
    cmd: calkit nb clean "analysis/validation_with_capytaine_plots.ipynb"
    deps:
    - path: analysis/validation_with_capytaine_plots.ipynb
      hash: md5
      md5: b07ef920240761c42e4b6815ab8e0f28
      size: 1723597
    outs:
    - path:
        .calkit/notebooks/cleaned/analysis/validation_with_capytaine_plots.ipynb
      hash: md5
      md5: 29fb878d471989d3d4b90d18e770b6a2
      size: 26757
  _clean-nb-low-m0-figs:
    cmd: calkit nb clean "analysis/low_m0_plots.ipynb"
    deps:
    - path: analysis/low_m0_plots.ipynb
      hash: md5
      md5: 4689f29bab60e2c8b5619296ec4f48c9
      size: 79205
    outs:
    - path: .calkit/notebooks/cleaned/analysis/low_m0_plots.ipynb
      hash: md5
      md5: 6a832537745ca618c89db30ddffa8e5d
      size: 11041
  low-m0-figs:
    cmd: calkit nb execute --environment openflash-on-branch --no-check --to
      html "analysis/low_m0_plots.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-branch
      hash: md5
      md5: 6fee7550c7f8d298fc987043523e190e.dir
      size: 9764
      nfiles: 1
    - path: .calkit/notebooks/cleaned/analysis/low_m0_plots.ipynb
      hash: md5
      md5: b4dbb74d88dfa46140698a49a87947d4
      size: 11593
    - path: dev/python/limiting-cases/low_m0.py
      hash: md5
      md5: 14c26f7e714c57e0de0a9b507a4a8091
      size: 5745
    - path: package/src/
      hash: md5
      md5: d5e40e2f0a2e7b547d3e8ec700c6a269.dir
      size: 228300
      nfiles: 27
    - path: sea-lab-utils
      hash: md5
      md5: bee8da5063bc568e5251764466d97f5c.dir
      size: 18456
      nfiles: 24
    outs:
    - path: .calkit/notebooks/executed/analysis/low_m0_plots.ipynb
      hash: md5
      md5: a8547653d62e3711ba5ed8ee05f647d3
      size: 79695
    - path: .calkit/notebooks/html/analysis/low_m0_plots.html
      hash: md5
      md5: f523c9b99747fc1d795116283f48806a
      size: 384476
    - path: pubs/JFM/figs/MEEM-Low-Freq.pdf
      hash: md5
      md5: 2642f708fe85c22730dd626452dd3ac8
      size: 402985
  _clean-nb-slant-figs:
    cmd: calkit nb clean "analysis/slant_data_plots.ipynb"
    deps:
    - path: analysis/slant_data_plots.ipynb
      hash: md5
      md5: ebde6536ed58d744302b59f82f9e80b7
      size: 171705
    outs:
    - path: .calkit/notebooks/cleaned/analysis/slant_data_plots.ipynb
      hash: md5
      md5: d0f3626ddf4a5f876f6e028ec1ea5ca4
      size: 10931
  slant-figs:
    cmd: calkit nb execute --environment openflash-on-branch --no-check --to
      html "analysis/slant_data_plots.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-branch
      hash: md5
      md5: 6fee7550c7f8d298fc987043523e190e.dir
      size: 9764
      nfiles: 1
    - path: .calkit/notebooks/cleaned/analysis/slant_data_plots.ipynb
      hash: md5
      md5: effb86232aa402753c74bf7fd4ffaa1a
      size: 44500
    - path: analysis/data/potential-slants.pkl
      hash: md5
      md5: 31cd3c8c05c5951db5f91ef631c166a0
      size: 1495603
    - path: analysis/data/slants.pkl
      hash: md5
      md5: 085a3f3953c7423cd8a47d5ef6271453
      size: 6715
    - path: analysis/data/slope-slants.pkl
      hash: md5
      md5: 3cb581a4d2a2774c678c1ab000b5bcdc
      size: 6664
    - path: sea-lab-utils
      hash: md5
      md5: bee8da5063bc568e5251764466d97f5c.dir
      size: 18456
      nfiles: 24
    outs:
    - path: .calkit/notebooks/executed/analysis/slant_data_plots.ipynb
      hash: md5
      md5: e0dec938a208e9500fa799ed8031c277
      size: 469931
    - path: .calkit/notebooks/html/analysis/slant_data_plots.html
      hash: md5
      md5: 9a3e09badb1f42fa46c4e3676fe17de2
      size: 881760
    - path: pubs/JFM/figs/Along-Outline.pdf
      hash: md5
      md5: d7bdf9c9285573974252d475e3cf8a79
      size: 109531
    - path: pubs/JFM/figs/Cross-Section-Potential-Slant.pdf
      hash: md5
      md5: 03325e72175cbeffe3a038a6efe86794
      size: 363449
    - path: pubs/JFM/figs/MEEM-CPT-Slant-Freq.pdf
      hash: md5
      md5: 87632752d88b4acd04e25368ff5541ea
      size: 137300
    - path: pubs/JFM/figs/Vary-Slopes.pdf
      hash: md5
      md5: d870c74ff963d9b5d0ac909657d86f31
      size: 178446
  _clean-nb-timing-figs:
    cmd: calkit nb clean "analysis/timing_plots.ipynb"
    deps:
    - path: analysis/timing_plots.ipynb
      hash: md5
      md5: 165a29d25393c7eae7a45137dd8f1204
      size: 331694
    outs:
    - path: .calkit/notebooks/cleaned/analysis/timing_plots.ipynb
      hash: md5
      md5: 6b1b55ca488e86706de62d5caab79a13
      size: 20403
  timing-figs:
    cmd: calkit nb execute --environment openflash-on-branch --no-check --to
      html "analysis/timing_plots.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-branch
      hash: md5
      md5: 6fee7550c7f8d298fc987043523e190e.dir
      size: 9764
      nfiles: 1
    - path: .calkit/notebooks/cleaned/analysis/timing_plots.ipynb
      hash: md5
      md5: 3d8acfcba713200795b331612bbb3d1e
      size: 22441
    - path: analysis/data/timing.pkl
      hash: md5
      md5: 8f44378ee5eed677e435c38ac905d0af
      size: 4035
    - path: sea-lab-utils
      hash: md5
      md5: bee8da5063bc568e5251764466d97f5c.dir
      size: 18456
      nfiles: 24
    outs:
    - path: .calkit/notebooks/executed/analysis/timing_plots.ipynb
      hash: md5
      md5: 06854bad21c3244180cab6fba4f884db
      size: 358957
    - path: .calkit/notebooks/html/analysis/timing_plots.html
      hash: md5
      md5: 35b5a43d18ba7232476414935e17c72b
      size: 699004
    - path: pubs/JFM/figs/MEEM-CPT-Speed-Comparison.pdf
      hash: md5
      md5: 045f6fb53f9cb56bdcf6153110d4574d
      size: 136511
    - path: pubs/JFM/figs/MEEM-CPT-Time-Matrix-Comparison.pdf
      hash: md5
      md5: 136f64c475df70c3a029d8c96d3ea507
      size: 104576
    - path: pubs/JFM/figs/MEEM-Comp-Distribution.pdf
      hash: md5
      md5: d05d914346cd03a9b4662b36903a423d
      size: 137530
  sparsity-figs:
    cmd: calkit nb execute --environment openflash-on-main --no-check --to html
      "analysis/sparsity_plots.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-main
      hash: md5
      md5: f54044d40708eae49d172a85254513fa.dir
      size: 9592
      nfiles: 1
    - path: .calkit/notebooks/cleaned/analysis/sparsity_plots.ipynb
      hash: md5
      md5: ee07dfad96a7d0196a3b895c62bc6502
      size: 11317
    outs:
    - path: .calkit/notebooks/executed/analysis/sparsity_plots.ipynb
      hash: md5
      md5: 9f677e417bc9f3bc1489082de1ac3c7e
      size: 109739
    - path: .calkit/notebooks/html/analysis/sparsity_plots.html
      hash: md5
      md5: 81ffac3dae40fbb64803344eedfcfb20
      size: 416883
    - path: pubs/JFM/figs/A_sparsity_plot.pdf
      hash: md5
      md5: 51308691ed65e0f0324b836298183256
      size: 12561
    - path: pubs/JFM/figs/B_sparsity_plot.pdf
      hash: md5
      md5: 5e51a27b563089ec5a0f50f6d830a573
      size: 9202
    - path: pubs/JFM/figs/C_sparsity_plot.pdf
      hash: md5
      md5: 736a8d4aa4366f94204eeeef422ece15
      size: 9863
  convergence-figs:
    cmd: calkit nb execute --environment openflash-on-branch --no-check --to
      html "analysis/convergence-results.ipynb"
    deps:
    - path: .calkit/env-locks/openflash-on-branch
      hash: md5
      md5: 6fee7550c7f8d298fc987043523e190e.dir
      size: 9764
      nfiles: 1
    - path: .calkit/notebooks/cleaned/analysis/convergence-results.ipynb
      hash: md5
      md5: 8cf6a258c632999e7b933e7dcdff214a
      size: 45478
    - path: sea-lab-utils
      hash: md5
      md5: bee8da5063bc568e5251764466d97f5c.dir
      size: 18456
      nfiles: 24
    outs:
    - path: .calkit/notebooks/executed/analysis/convergence-results.ipynb
      hash: md5
      md5: acf2047d06b687e067222f7d6392dcc6
      size: 232924
    - path: .calkit/notebooks/html/analysis/convergence-results.html
      hash: md5
      md5: ea60e8624fe5133832c957c460f6232c
      size: 609842
    - path: pubs/JFM/figs/alpha-beta-explanation.pdf
      hash: md5
      md5: c5ccd7b1c7f815aeca90c3e5dfc0b0f4
      size: 380172
    - path: pubs/JFM/figs/alpha-beta-to-trend.pdf
      hash: md5
      md5: fc2a573dbc4458d901d43f22c3d40ce7
      size: 403400
    - path: pubs/JFM/figs/convergence-fit-assessment.pdf
      hash: md5
      md5: e61b9659ab6a5593c1ec1e62f388dd56
      size: 209396
  graphical-abstract:
    cmd: calkit latex build -e tex --no-check pubs/JFM/figs/graph_abstract.tex
    deps:
    - path: .calkit/env-locks/tex
      hash: md5
      md5: 1d20723629fc752e4776c7e1d6cb328e.dir
      size: 1147
      nfiles: 1
    - path: pubs/JFM/figs/graph_abstract.tex
      hash: md5
      md5: ec8dbe649b3b67812906d82d7a78ce23
      size: 2271
    outs:
    - path: pubs/JFM/figs/graph_abstract.log
      hash: md5
      md5: a9b22b3b8142f53823030431b128ca89
      size: 16701
    - path: pubs/JFM/figs/graph_abstract.pdf
      hash: md5
      md5: ab6898db6da82271616f7b82ad05056a
      size: 11873