Skip to content

General purpose sq.tl.align() function with STAlign core logic #658

General purpose sq.tl.align() function with STAlign core logic

General purpose sq.tl.align() function with STAlign core logic #658

Triggered via pull request April 16, 2026 10:53
Status Cancelled
Total duration 4m 23s
Artifacts 2

test.yaml

on: pull_request
get-environments
8s
get-environments
ensure-data-is-cached
1m 7s
ensure-data-is-cached
Matrix: test
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
2m 26s
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Tests pass in all hatch environments
4s
Tests pass in all hatch environments
Fit to window
Zoom out
Zoom in

Annotations

12 errors and 8 warnings
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
The operation was canceled.
hatch-test.py3.13-pre (PRE-RELEASE DEPENDENCIES) (ubuntu-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
hatch-test.py3.13-pre (PRE-RELEASE DEPENDENCIES) (ubuntu-latest)
The operation was canceled.
hatch-test.py3.12-stable (ubuntu-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
hatch-test.py3.12-stable (ubuntu-latest)
The operation was canceled.
hatch-test.py3.11-stable (ubuntu-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
hatch-test.py3.11-stable (ubuntu-latest)
The operation was canceled.
hatch-test.py3.13-stable (macos-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
hatch-test.py3.13-stable (macos-latest)
The operation was canceled.
Tests pass in all hatch environments
Process completed with exit code 1.
Test
Canceling since a higher priority waiting request for Test-refs/pull/1162/merge exists
ensure-data-is-cached
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.13-pre (PRE-RELEASE DEPENDENCIES) (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.12-stable (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.12-stable (ubuntu-latest)
No files were found with the provided path: /home/runner/work/squidpy/squidpy/tests/figures/*. No artifacts will be uploaded.
hatch-test.py3.11-stable (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.13-stable (macos-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.13-stable (macos-latest)
No files were found with the provided path: /Users/runner/work/squidpy/squidpy/tests/figures/*. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size Digest
visual_test_results_Linux_hatch-test.py3.11-stable
689 KB
sha256:b4a10f654cf23ee0bd43bffff2bc5b8e1320f178a80e7639a03dbb03225f1e58
visual_test_results_Linux_hatch-test.py3.13-pre
39.9 KB
sha256:3ca4e9a32ec8669843e716fa3bae2f9f12ed85fcb8ac77ab6336f8abe14b7557