obds2fhir/docker-compose.yml at develop · samply/obds2fhir · GitHub

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volumes:
  obds2fhir_data:

services:
  obds2fhir:
    image: docker.verbis.dkfz.de/cache/samply/obds2fhir:develop
    environment:
      #FILE_PATH: "/obds2fhir/clinical_data"
      STORE_PATH: "http://host.docker.internal:8090/fhir"
      #STORE_AUTH: "user:password"
      #IDENTIFIER_SYSTEM: "http://dktk.dkfz.de/fhir/onco/core/CodeSystem/PseudonymArtCS"
      #MAINZELLISTE_URL: "http://host.docker.internal:8080"
      #MAINZELLISTE_APIKEY: "pleaseChangeMe"
      #IDTYPE: "pid"
      SALT: "createLocalCustomSalt"
      #SSL_CERTIFICATE_VALIDATION: "true"
      #ADD_DEPARTMENTS: "false"
      #WAIT_FOR_CONNECTION: "false"
      #LOG_LEVEL: "INFO"
      #PATIENT_ID_PLAINTEXT: "false"
    #command: [
    #  "-Dkeep.internal.id=false",       # Keep cleartext Patient/@Patient_ID as FHIR Patient.id (default: false)
    #  "-Duse.pseudonym=false",          # Use pseudonym as Patient.id instead of Patient/@Patient_ID (default: false)
    #  "-Dmainzelliste.external.id=true" # Provide Patient/@Patient_ID as locallyUniqueId to Mainzelliste (default: true)
    #]
    volumes:
      - ./clinical_data:/obds2fhir/clinical_data
      #- /etc/bridgehead/traefik-tls:/.../:ro
    extra_hosts:
      - "host.docker.internal:host-gateway"