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qiime2 export tool uses wrong format #89

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@bernt-matthias

Problem: There is no nwk format in Galaxy. The correct name is newick.

Therefore the discover datasets used here is wrong:

<discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>

Solution could be

<discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;tree)\.nwk" format="newick" visible="true"/>

The change would be needed in a few more places.

Workaround for users: manually assign datatype newick (in workflows this can be automatized)

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