Problem: There is no nwk format in Galaxy. The correct name is newick.
Therefore the discover datasets used here is wrong:
|
<discover_datasets assign_primary_output="true" pattern="(?P<designation>tree)\.(?P<ext>nwk)" visible="true"/> |
Solution could be
<discover_datasets assign_primary_output="true" pattern="(?P<designation>tree)\.nwk" format="newick" visible="true"/>
The change would be needed in a few more places.
Workaround for users: manually assign datatype newick (in workflows this can be automatized)
Problem: There is no
nwkformat in Galaxy. The correct name isnewick.Therefore the discover datasets used here is wrong:
galaxy-tools/tools/suite_qiime2_core__tools/qiime2_core__tools__export.xml
Line 1268 in 8ff4403
Solution could be
The change would be needed in a few more places.
Workaround for users: manually assign datatype
newick(in workflows this can be automatized)