update staramr key

Author: sgsutcliffe

tests/pipelines/main.from_assemblies.nf.test

@@ -850,9 +850,9 @@ nextflow_pipeline {
             assert iridanext_metadata.salmonella_GCA_000008105."StarAMR Genotype" == "aadA1, aadA2, aadA2, aph(3\'\')-Ib, aph(3\')-Ia, blaCMY-2, blaTEM-1B, CmlA7, dfrA12, gyrA (D87N), gyrA (S83F), sul1, sul3, tet(A)"
             assert final_report_tmap."StarAMR.0.Genotype" == "aadA1, aadA2, aadA2, aph(3\'\')-Ib, aph(3\')-Ia, blaCMY-2, blaTEM-1B, CmlA7, dfrA12, gyrA (D87N), gyrA (S83F), sul1, sul3, tet(A)"
 
-            assert salmonella_json.StarAMR."0"."Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, unknown[CmlA7_1_JQ639792], trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
-            assert iridanext_metadata.salmonella_GCA_000008105."StarAMR Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, unknown[CmlA7_1_JQ639792], trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
-            assert final_report_tmap."StarAMR.0.Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, unknown[CmlA7_1_JQ639792], trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
+            assert salmonella_json.StarAMR."0"."Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, chloramphenicol, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
+            assert iridanext_metadata.salmonella_GCA_000008105."StarAMR Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, chloramphenicol, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
+            assert final_report_tmap."StarAMR.0.Predicted Phenotype" == "streptomycin, kanamycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, chloramphenicol, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline"
 
             assert salmonella_json.StarAMR."0"."CGE Predicted Phenotype" == "Spectinomycin, Streptomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid, Cephalothin, Chloramphenicol, Trimethoprim, Nalidixic acid, Ciprofloxacin, Sulfamethoxazole, Doxycycline, Tetracycline"
             assert iridanext_metadata.salmonella_GCA_000008105."StarAMR CGE Predicted Phenotype" == "Spectinomycin, Streptomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid, Cephalothin, Chloramphenicol, Trimethoprim, Nalidixic acid, Ciprofloxacin, Sulfamethoxazole, Doxycycline, Tetracycline"