Repositories list

• multimodal_tcells

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2026Jul 22, 2026

• ArchVelo

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•88 stars•00 issues•00 pull requests•Updated Jul 17, 2026Jul 17, 2026

• ecoton

  Public
  Expression Colocation Of Transcripts fOr Niche discovery

  HTML

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jul 12, 2026Jul 12, 2026

• pritykinlab.github.io

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 11, 2026Jul 11, 2026

• domino

  Public
  Sequence-based deep learning framework for quantitative modeling of chromatin insulation

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 16, 2026Jun 16, 2026

• tcf7_clonal_perturbseq

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• Gloss

  Public
  Predictive modeling of LIPSTIC + scRNA-seq data

  Python

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• ArchVelo_notebooks

  Public
  Notebooks for generating figures in ArchVelo paper

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 8, 2026May 8, 2026

• eosinophil-intestinal-remodeling-analysis

  Public
  Analysis of scRNA and Xenium data for Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• guidescanpy

  Public
  Python

  •22 forks•22 stars•99 issues•33 pull requests•Updated Mar 31, 2026Mar 31, 2026

• suhw-tad-boundary-mechanisms

  Public
  Computational analysis for paper analyzing mechanistic role of su(Hw) at Drosophila TAD boundaries.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• gloss-paper-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• Spatial-Cell-Type-Deconvolution-Benchmarking

  Public
  Benchmarking cell type deconvolution methods for spatial transcriptomics

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 30, 2025Nov 30, 2025

• InterDomain

  Public
  Code to run metadomain calling on your dataset

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• scTir1_Analysis

  Public
  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 15, 2025Aug 15, 2025

• pritykinlab_onboarding

  Public
  Shell

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2025Jun 27, 2025

• drosophila-microc-zga

  Public
  Analysis of Drosophila Micro-C at and around ZGA

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• guidescan-frontend

  Public
  JavaScript

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• guidescan-cli

  Public
  a guideRNA database generation tool

  bioinformaticscppbiology+ 7

  bioinformaticscppbiologycomputational-biologybioinformatics-pipelinecrisprcrispr-cas9grnabioinformatics-toolcrispr-design

  C++

  •

  MIT License

  •88 forks•2121 stars•99 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• guidescan2-analysis

  Public
  Python

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jan 11, 2025Jan 11, 2025

• metadomain_paper

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 14, 2024Oct 14, 2024

• ulipstic-analysis

  Public
  Jupyter Notebook

  •44 forks•1010 stars•00 issues•00 pull requests•Updated Jul 9, 2024Jul 9, 2024

• preprocessing_benchmarking

  Public
  00 forks•00 stars•22 issues•00 pull requests•Updated Jun 5, 2024Jun 5, 2024

• snakemake-bulkrna-seq

  Public
  A snakemake workflow for bulk RNA-seq data preprocessing including sequence alignment, quality check etc.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 4, 2023May 4, 2023

• guidescan-web

  Public
  A guideRNA design tool for the modern era.

  Clojure

  •

  Other

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2023Apr 20, 2023

• bulkrna-differential-analysis

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 7, 2023Feb 7, 2023