All

111 repositories

nextflow-dev-builds
Public
Automated development builds of Nextflow from master and open pull requests, for testing purposes only
Apache License 2.0
•0•0•0•1•Updated Aug 13, 2026Aug 13, 2026
training
Public
Nextflow training material
training learning tutorial
training learning tutorial workshop nextflow pipelines teaching workflows
Nextflow
•
Other
•325•261•36•19•Updated Aug 12, 2026Aug 12, 2026
nextflow
Public
A DSL for data-driven computational pipelines
docker groovy hello
docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research
Groovy
•
Apache License 2.0
•802•3.5k•329•90•Updated Aug 12, 2026Aug 12, 2026
vscode-language-nextflow
Public
Nextflow language support for Visual Studio Editor
nextflow vscode-extension
nextflow vscode-extension
TypeScript
•
MIT License
•18•38•11•12•Updated Aug 12, 2026Aug 12, 2026
website
Public
Nextflow public web site
HTML
•155•9•2•17•Updated Aug 10, 2026Aug 10, 2026
nf-sqldb
Public
SQL support plugin for Nextflow
Groovy
•
Apache License 2.0
•1•32•8•8•Updated Aug 10, 2026Aug 10, 2026
nf-schema
Public
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
workflow bioinformatics schema
workflow bioinformatics schema validation pipeline nextflow json-schema params parameter-validation nextflow-schema
Groovy
•
Apache License 2.0
•31•57•39•3•Updated Aug 10, 2026Aug 10, 2026
nf-nomad
Public
Hashicorp Nomad executor plugin for Nextflow
Groovy
•
Apache License 2.0
•6•4•1•1•Updated Aug 9, 2026Aug 9, 2026
nf-trino
Public
HTML
•
Apache License 2.0
•0•0•5•0•Updated Aug 9, 2026Aug 9, 2026
agent-skills
Public
Claude Code Plugin for Nextflow
Shell
•
Apache License 2.0
•0•15•0•1•Updated Aug 5, 2026Aug 5, 2026
language-server
Public
The Nextflow language server
nextflow language-server-protocol
nextflow language-server-protocol
Java
•
Apache License 2.0
•7•31•33•13•Updated Aug 5, 2026Aug 5, 2026
tree-sitter-nextflow
Public
JavaScript
•
MIT License
•2•4•9•0•Updated Aug 4, 2026Aug 4, 2026
rnaseq-nf
Public
A proof of concept of RNAseq pipeline
genomics nextflow rnaseq
genomics nextflow rnaseq
Nextflow
•
Apache License 2.0
•119•85•4•2•Updated Aug 2, 2026Aug 2, 2026
plugins
Public
Nextflow plugins index repository
35•6•0•50•Updated Aug 2, 2026Aug 2, 2026
summit-website
Public
TypeScript
•5•2•0•1•Updated Jul 29, 2026Jul 29, 2026
nf-co2footprint
Public
A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.
workflow bioinformatics analysis
workflow bioinformatics analysis nextflow pipelines emissions co2 co2-footprint
Groovy
•
Apache License 2.0
•12•27•8•7•Updated Jul 27, 2026Jul 27, 2026
nf-ga4gh
Public
GA4GH plugin for Nextflow
Java
•
Apache License 2.0
•6•5•8•2•Updated Jul 4, 2026Jul 4, 2026
run-until
Public
Iterative run-until-condition loops in Nextflow using topic channels
Nextflow
•
MIT License
•0•1•0•0•Updated Jul 3, 2026Jul 3, 2026
nf-plugin-template
Public template
Template project for creating Nextflow plugins (beta)
Groovy
•
Apache License 2.0
•3•1•1•0•Updated Jun 15, 2026Jun 15, 2026
nextflow-plugin-gradle
Public
Gradle plugin for making Nextflow plugins
Groovy
•
Apache License 2.0
•0•3•1•2•Updated Jun 15, 2026Jun 15, 2026
blast-example
Public
A basic blast pipeline using nextflow
Nextflow
•17•10•0•0•Updated Jun 8, 2026Jun 8, 2026
schemas
Public
Specifications of Nextflow schemas
nextflow json-schema nf-core
nextflow json-schema nf-core
Shell
•
Apache License 2.0
•2•4•6•2•Updated May 29, 2026May 29, 2026
hyperopt
Public
Nextflow pipeline for hyperparameter optimization of machine learning models
machine-learning nextflow
machine-learning nextflow
Python
•
Mozilla Public License 2.0
•6•25•0•0•Updated May 26, 2026May 26, 2026
citations
Public
Generate up to date plots of Nextflow citations, vs. other workflow managers.
Python
•
Apache License 2.0
•0•0•2•0•Updated May 22, 2026May 22, 2026
nf-prov
Public
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
bioinformatics nextflow pipelines
bioinformatics nextflow pipelines crates provenance workflows research-object biocompute-objects bco biocompute
Groovy
•
Apache License 2.0
•14•30•14•3•Updated May 17, 2026May 17, 2026
hello
Public
Classic hello world script in Nextflow language
nextflow hello-world
nextflow hello-world
Nextflow
•
Apache License 2.0
•125•26•0•6•Updated May 13, 2026May 13, 2026
nf-stress
Public
Docker container used to run Nextflow stress metrics
Nextflow
•
Apache License 2.0
•1•0•0•0•Updated Apr 18, 2026Apr 18, 2026
k8s-fuse-plugin
Public
Kubernetes device plugin for using /dev/fuse without privileged flag
Go
•
Apache License 2.0
•4•26•4•0•Updated Apr 10, 2026Apr 10, 2026
.github
Public
Apache License 2.0
•0•1•0•0•Updated Mar 20, 2026Mar 20, 2026
nf-parquet
Public
Plugin implementing the support for Apache Parquet files (experimental)
nextflow parquet
nextflow parquet
Groovy
•
Apache License 2.0
•2•4•1•0•Updated Mar 14, 2026Mar 14, 2026

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tree-sitter-nextflow

rnaseq-nf

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nf-co2footprint

nf-ga4gh

run-until

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blast-example

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111 repositories