Incompatible numpy & tensorflow & miscnn

[sensiang705]

The contradictory required version of numpy & miscnn, numpy & tensorflow made it impossible to run the code. Furthermore, NIFTI_interface is not defined. I managed to get into the source code but can't debug it due to lack of software coding knowledge.

[muellerdo]

Hey @sensiang705,

could you elaborate a little bit what exactly is not working.

The current version of this repository should be fully reproducible with the provided MIScnn & Tensorflow version defined in requirements.txt as well as the training/inference with any newer version of MIScnn & Tensorflow.
MIScnn or Tensorflow should also be able to run with any newer NumPy version.

The NIfTI Interface is provided in the MIScnn package.

I highly suspect that your installation process of MIScnn, Tensorflow or NumPy was not correctly performed.

Please validate your installation and elaborate a bit more on the issues on your side for more efficient support.

Cheers,
Dominik

[Saqueeb]

Hey there,
I am facing the same problem, the requirements.txt file is not running the way it supposed to.

ERROR: Cannot install -r requirements.txt (line 4) and tensorflow==2.3.0 because these package versions have conflicting dependencies.

The conflict is caused by:
The user requested tensorflow==2.3.0
miscnn 1.1.9 depends on tensorflow==2.4.0

How to resolve this?

[muellerdo]

Hey @Saqueeb,

thanks for pointing this out. I incremented the Tensorflow version to avoid dependency conflicts.
But you should be able to use any tensorflow version over 2.1 to get it running.

Fix: 8a7c9d6

Cheers,
Dominik