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Remove unused dependencies from DESCRIPTION
Drop clusterProfiler and org.Sc.sgd.db from Suggests (GSEA vignette section replaced with descriptive text). Also remove unused Imports (conflicted, DT, htmlwidgets, readr, writexl) and Suggests (data.table, docopt, dtplyr, nipals, readxl, prora) identified during dependency cleanup.
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DESCRIPTION

Lines changed: 1 addition & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -27,17 +27,14 @@ BugReports: https://github.com/wolski/prolfqua/issues
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Imports:
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bookdown,
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broom,
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conflicted,
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dplyr,
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DT,
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forcats,
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gridExtra,
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ggplot2,
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ggbeeswarm,
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ggrepel,
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ggridges,
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ggpubr,
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htmlwidgets,
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iheatmapr,
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lme4,
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lmerTest,
@@ -48,7 +45,6 @@ Imports:
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plotly,
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progress,
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purrr,
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readr,
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rlang,
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statmod,
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stringi,
@@ -58,28 +54,19 @@ Imports:
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tibble,
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methods,
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UpSetR,
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yaml,
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writexl
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yaml
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Suggests:
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corrplot,
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crosstalk,
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data.table,
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docopt,
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dtplyr,
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KernSmooth,
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knitr,
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nipals,
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preprocessCore,
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readxl,
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rmarkdown,
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S4Vectors,
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testthat,
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SummarizedExperiment,
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clusterProfiler,
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limma,
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org.Sc.sgd.db,
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proDA,
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prora,
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vsn,
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zCompositions
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RoxygenNote: 7.3.3

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