Built site for prolfqua@1.7.0: 9b60b06

Author: wolski

articles/Comparing2Groups.html

@@ -14,7 +14,7 @@ articles:
   QualityControlAndSampleSizeEstimation: QualityControlAndSampleSizeEstimation.html
   SimulateData: SimulateData.html
   TestingMissingInference: TestingMissingInference.html
-last_built: 2026-07-29T10:43Z
+last_built: 2026-07-29T10:54Z
 urls:
   reference: https://wolski.github.io/prolfqua/reference
   article: https://wolski.github.io/prolfqua/articles

pkgdown.yml

@@ -407,7 +407,7 @@ print(p)
 #> $FDR
 #> 
 dev.off()
-#> agg_record_1ade1dbd5162 
+#> agg_record_1aed674fe6ca 
 #>                       2 
 
 dd <- prolfqua::sim_lfq_data_2factor_config(Nprot = 100,weight_missing = 0.1)
@@ -447,6 +447,6 @@ pl$volcano()
 #> $FDR
 #> 
 dev.off()
-#> agg_record_1ade1dbd5162 
+#> agg_record_1aed674fe6ca 
 #>                       2 
 ```

reference/ContrastsMissing.html

@@ -378,9 +378,9 @@ mod$anova_histogram()
 #> Warning: not implemented
 #> NULL
 mod$write_coef_figures(tempdir())
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_Histogram_modelFirth.pdf
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_volcano_plot_modelFirth.pdf
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_Pairsplot_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_Histogram_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_volcano_plot_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_Pairsplot_modelFirth.pdf
 #> # A tibble: 10 × 4
 #>    subject_id  `(Intercept)`   group_B group_Ctrl
 #>    <chr>               <dbl>     <dbl>      <dbl>
@@ -394,7 +394,7 @@ mod$write_coef_figures(tempdir())
 #>  8 XYrp6h~5793       2.20     1.26e-15  -4.27e-16
 #>  9 quTD7H~4566       0.847    1.35e+ 0  -8.47e- 1
 #> 10 tHE075~8231       0.847    1.35e+ 0   1.35e+ 0
-#> agg_record_1ade341043a1 
+#> agg_record_1aed453d2bac 
 #>                       2 
 
 istar <- prolfqua::sim_lfq_data_protein_config(Nprot = 10, with_missing = TRUE,
@@ -451,9 +451,9 @@ mod$anova_histogram()
 #> Warning: not implemented
 #> NULL
 mod$write_coef_figures(tempdir())
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_Histogram_modelFirth.pdf
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_volcano_plot_modelFirth.pdf
-#> Writing figure into : /tmp/Rtmpknr0Q7/Coef_Pairsplot_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_Histogram_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_volcano_plot_modelFirth.pdf
+#> Writing figure into : /tmp/RtmpHUeQfj/Coef_Pairsplot_modelFirth.pdf
 #> # A tibble: 10 × 4
 #>    subject_id  `(Intercept)`   group_B group_Ctrl
 #>    <chr>               <dbl>     <dbl>      <dbl>
@@ -467,6 +467,6 @@ mod$write_coef_figures(tempdir())
 #>  8 quTD7H~4566         2.20  -1.35e+ 0  -2.20e+ 0
 #>  9 tCZCHm~6695         2.20  -1.35e+ 0  -2.16e-15
 #> 10 tHE075~8231         0.847  1.35e+ 0   1.59e-16
-#> agg_record_1ade341043a1 
+#> agg_record_1aed453d2bac 
 #>                       2 
 ```

reference/ContrastsMissing.md

@@ -302,7 +302,7 @@ The objects of this class are cloneable with this method.
 strat <- StrategyLM$new("Intensity ~ condition", model_name = "parallel design")
 strat$model_fun(get_formula = TRUE)
 #> Intensity ~ condition
-#> <environment: 0x55a99b3c9d38>
+#> <environment: 0x556289d27b30>
 strat$weights
 #> NULL
 ```

reference/ModelFirth.html

@@ -208,7 +208,7 @@ The objects of this class are cloneable with this method.
 strat <- StrategyLimma$new("abundance ~ group_")
 strat$formula
 #> abundance ~ group_
-#> <environment: 0x55a9a27b5fb8>
+#> <environment: 0x556291e34f18>
 strat$model_name
 #> [1] "limma"
 ```