chore: Fix R CMD check notes (ignore hidden files, wrap long examples)

Author: wolski

.Rbuildignore

@@ -27,3 +27,6 @@ R/tidyMS_stanr\.R
 ^data-raw$
 ^CLAUDE\.md$
 ^Rplots\.pdf$
+^\.cursor$
+^\.githooks$
+^air\.toml$

R/logistf.R

@@ -93,7 +93,8 @@ contrasts_linfct_firth <- function(models, subject_Id = "protein_Id") {
 #' @export
 #' @family modelling
 #' @examples
-#' istar <- sim_lfq_data_protein_config(Nprot = 10, with_missing = TRUE, weight_missing = 0.5, seed = 3)
+#' istar <- sim_lfq_data_protein_config(
+#'   Nprot = 10, with_missing = TRUE, weight_missing = 0.5, seed = 3)
 #' lfqdata <- LFQData$new(istar$data, istar$config)
 #' mod <- build_model_glm_protein(lfqdata, "~ group_")
 #' head(mod$get_coefficients())
@@ -118,7 +119,8 @@ build_model_glm_protein <- function(lfqdata, modelstr) {
 #' @export
 #' @family modelling
 #' @examples
-#' istar <- sim_lfq_data_peptide_config(Nprot = 10, with_missing = TRUE, weight_missing = 0.5, seed = 3)
+#' istar <- sim_lfq_data_peptide_config(
+#'   Nprot = 10, with_missing = TRUE, weight_missing = 0.5, seed = 3)
 #' lfqdata <- LFQData$new(istar$data, istar$config)
 #' mod <- build_model_glm_peptide(lfqdata, "~ group_")
 #' head(mod$get_coefficients())