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‎articles/Comparing2Groups.html‎

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‎articles/Comparing2Groups.md‎

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## opt_mz:
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## opt_rt:
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## opt_se:
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## pattern_contaminants: NULL
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## pattern_decoys: NULL
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## pop_response: function ()
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## sample_name: sampleName
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## sep: ~
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## [1] prolfqua_1.6.3 dplyr_1.2.1
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##
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## [1] Rdpack_2.6.6 gridExtra_2.3 rlang_1.2.0
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## [1] Rdpack_2.6.6 gridExtra_2.3.1 rlang_1.2.0
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## [4] magrittr_2.0.5 clue_0.3-68 GetoptLong_1.1.1
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## [7] otel_0.2.0 matrixStats_1.5.0 compiler_4.5.2
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## [10] mgcv_1.9-3 png_0.1-9 systemfonts_1.3.2
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## [25] UpSetR_1.4.1 purrr_1.2.2 xfun_0.59
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## [31] cachem_1.1.0 jsonlite_2.0.0 progress_1.2.3
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## [34] later_1.4.8 pan_1.9 prettyunits_1.2.0
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## [34] later_1.4.8 pan_2.0 prettyunits_1.2.0
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## [37] broom_1.0.13 parallel_4.5.2 cluster_2.1.8.1
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## [43] RColorBrewer_1.1-3 limma_3.66.0 boot_1.3-32

‎articles/ContrastFacade2Factor.html‎

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‎articles/ContrastFacade2Factor.md‎

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## [1] ggplot2_4.0.3 dplyr_1.2.1 prolfqua_1.6.3
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## [1] Rdpack_2.6.6 gridExtra_2.3 rlang_1.2.0
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## [4] magrittr_2.0.5 clue_0.3-68 GetoptLong_1.1.1
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## [22] nloptr_2.2.1 ragg_1.5.2 UpSetR_1.4.1
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## [25] purrr_1.2.2 xfun_0.59 glmnet_5.0
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## [28] jomo_2.7-6 logistf_1.26.1 cachem_1.1.0
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## [31] jsonlite_2.0.0 progress_1.2.3 pan_1.9
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## [31] jsonlite_2.0.0 progress_1.2.3 pan_2.0
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## [34] broom_1.0.13 parallel_4.5.2 prettyunits_1.2.0
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## [37] cluster_2.1.8.1 R6_2.6.1 bslib_0.11.0
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## [40] stringi_1.8.7 RColorBrewer_1.1-3 limma_3.66.0

‎articles/ContrastFacades.html‎

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‎articles/ContrastFacades.md‎

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## [1] ggplot2_4.0.3 dplyr_1.2.1 prolfqua_1.6.3
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## [1] Rdpack_2.6.6 gridExtra_2.3 rlang_1.2.0
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## [4] magrittr_2.0.5 clue_0.3-68 GetoptLong_1.1.1
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## [22] nloptr_2.2.1 ragg_1.5.2 UpSetR_1.4.1
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## [31] jsonlite_2.0.0 progress_1.2.3 pan_1.9
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## [31] jsonlite_2.0.0 progress_1.2.3 pan_2.0
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## [34] Rfit_0.27.0 prettyunits_1.2.0 broom_1.0.13
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## [37] parallel_4.5.2 cluster_2.1.8.1 R6_2.6.1
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‎articles/Contrasts_from_factors.html‎

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‎articles/Contrasts_from_factors.md‎

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## [67] systemfonts_1.3.2 foreach_1.5.2 plotly_4.12.0
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## [76] pkgdown_2.2.0 codetools_0.2-20 shape_1.4.6.1
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## [79] gtable_0.3.6 lme4_2.0-1 ComplexHeatmap_2.26.1
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## [85] circlize_0.4.18 R6_2.6.1 Rdpack_2.6.6
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## [91] evaluate_1.0.5 lattice_0.22-7 rbibutils_2.4.1
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## [94] png_0.1-9 backports_1.5.1 broom_1.0.13
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## [97] bslib_0.11.0 Rcpp_1.1.1-1.1 gridExtra_2.3
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## [97] bslib_0.11.0 Rcpp_1.1.1-1.1 gridExtra_2.3.1
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## [100] nlme_3.1-168 mgcv_1.9-3 logistf_1.26.1
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‎articles/CreatingConfigurations.html‎

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‎articles/CreatingConfigurations.md‎

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## [1] stats graphics grDevices utils datasets methods base
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## [4] magrittr_2.0.5 clue_0.3-68 GetoptLong_1.1.1
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## [22] nloptr_2.2.1 ragg_1.5.2 UpSetR_1.4.1
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## [25] purrr_1.2.2 xfun_0.59 glmnet_5.0
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## [28] jomo_2.7-6 logistf_1.26.1 cachem_1.1.0
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## [31] jsonlite_2.0.0 pan_1.9 broom_1.0.13
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## [31] jsonlite_2.0.0 pan_2.0 broom_1.0.13
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## [34] parallel_4.5.2 cluster_2.1.8.1 R6_2.6.1
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## [37] stringi_1.8.7 bslib_0.11.0 RColorBrewer_1.1-3
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## [40] limma_3.66.0 boot_1.3-32 rpart_4.1.24

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