Blended_seq_imputation/nextflow_schema.json at main · collaborativebioinformatics/Blended_seq_imputation · GitHub

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{
  "$schema": "http://json-schema.org/draft-07/schema",
  "$id": "https://raw.githubusercontent.com/Blended_seq_imputation/master/nextflow_schema.json",
  "title": "Nextflow pipeline parameters",
  "description": "This pipeline uses Nextflow with bcftools and GLIMPSE2 to generate an imputaion panel for lpwgs or BGE imputation. The JSON Schema was built using the nf-core pipeline schema builder.",
  "type": "object",
  "definitions": {
      "inputs": {
          "title": "Inputs",
          "type": "object",
          "description": "",
          "default": "",
          "properties": {
              "input_bcf_list": {
                  "type": "string",
                  "description": "Input samplesheet in TSV format",
                  "format": "file-path"
              },
              "map_dir": {
                  "type": "string",
                  "description": "directory for chromosome maps with wildcard",
                  "format": "directory-path"
              },
              "output_dir": {
                  "type": "string",
                  "format": "directory-path",
                  "description": "Local path to output directory",
                  "default": "./results"
              },
              "threads": {
                  "type": "integer",
                  "description": "number of threads for processing",
                  "default": "4"
              }
          }
      }
  },
  "allOf": [
      {
          "$ref": "#/definitions/inputs"
      }
  ]
}