- Removes
ivpackdependency from additional examples vignette in order to get geex back on CRAN. - Removes the internal
compute_sum_of_listandcompute_pairwise_sum_of_listfunctions from exports.
- adds a
Asolverargument tom_estimateto allow for using a different to compute the inverse of the A ("bread") matrix.
- renames the
geex-summaryclass togeex_summary - adds
ee_i(observed estimating function values) to the component object - various other bug fixes
- Added
grab_design_levelsto find all factor-levels in a design matrix. This output can then be passed to thexlevarg inmodel.matrixor more importantly throughgrab_psiFunfor the models. This fixes issue 41.- Notably, if this seems to work well, then perhaps
grab_design_levelscould be added to the body ofgrab_psiFunto automatically handle this issue.
- Notably, if this seems to work well, then perhaps
- Edited
binomial_integrandto hopefully handle singleton groups better. It will now attempt to coerce back to a one-row matrix before callingapply.
- fixes issue when using
grab_psiFUNforglmobjects and non-grouped data. - removes option to use weights with
grab_psiFUN, as it was not clear that was implemented correctly.
- adds basic examples for most functions, though to be sure, the vignettes provide more useful examples.
- requires R >= 3.3
- add a
callslot to the S4geexobject. Now theupdatefunction can be used to update elements of anm_estimatecall.
- implements an
S4system throughoutgeex estimate_equationsbecomesm_estimate. See documentation for changes to arguments. Notably,eeFUNbecomesestFUNmake_eeFUNfunctions becomegrab_psiFUN- speeds up the summation of list of matrices with
compute_sum_of_list - plus many more updates and vignettes
- adds a
weightsargument toestimate_equationsfor faster computations with grouped data. See the weights vignette for a demonstration.
- changes names of list items used in a
corrections_listinestimate_equations. Each item of thecorrection_listmust itself be a list at least one item:correctFUN. Additional arguments tocorrectFUNmay be passed viacorrectFUN_control.
- adds a vignette explaining how to use a different root finding algorithm via
rootFUNargument inestimate_equations - fixes issues where different
rootFUNs would not work:rootsargument no longer needs to be set ifcompute_roots = TRUE. Instead, starting values are passed via therootFUN_controllist.- Removes the
startargument fromcompute_eeroots; set this option inrootFUN_control.
- overhauls which arguments are passed to
estimate_equationsand how these arguments are parsed internally. See this function's documentation for details - adds
geexexdataset for use in examples
- the inital
geexrelease