Updated docs to commit aa5a32773fe7237ed1ffdb0ead92fb098f21868d

Author: actions-user

_sources/recipes/babappalign/README.rst.txt

@@ -27,7 +27,7 @@ babappalign
 
 
 
-      ``1.0.4-0``,  ``1.0.0-0``
+      ``1.1.3-0``,  ``1.0.4-0``,  ``1.0.0-0``
 
 
 
@@ -92,7 +92,7 @@ babappalign
 
     <script>
         var package = "babappalign";
-        var versions = ["1.0.4","1.0.0"];
+        var versions = ["1.1.3","1.0.4","1.0.0"];
     </script>
 
 

_sources/recipes/bioconductor-anndatar/README.rst.txt

@@ -0,0 +1,115 @@
+:orphan:  .. only available via index, not via toctree
+
+.. title:: Package Recipe 'bioconductor-anndatar'
+.. highlight: bash
+
+bioconductor-anndatar
+=====================
+
+.. conda:recipe:: bioconductor-anndatar
+   :replaces_section_title:
+   :noindex:
+
+   AnnData interoperability in R
+
+   :homepage: https://bioconductor.org/packages/3.22/bioc/html/anndataR.html
+   :license: MIT + file LICENSE
+   :recipe: /`bioconductor-anndatar <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-anndatar>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-anndatar/meta.yaml>`_
+
+   Bring the power and flexibility of AnnData to the R ecosystem\, allowing you to effortlessly manipulate and analyse your single\-cell data. This package lets you work with backed h5ad and zarr files\, directly access various slots \(e.g. X\, obs\, var\)\, or convert the data into SingleCellExperiment and Seurat objects.
+
+
+.. conda:package:: bioconductor-anndatar
+
+   |downloads_bioconductor-anndatar| |docker_bioconductor-anndatar|
+
+   :versions:
+      
+      
+
+      ``1.0.0-0``
+
+      
+
+   
+   :depends r-base: ``>=4.5,<4.6.0a0``
+   :depends r-cli: 
+   :depends r-lifecycle: 
+   :depends r-matrix: 
+   :depends r-purrr: 
+   :depends r-r6: ``>=2.4.0``
+   :depends r-reticulate: ``>=1.41.1``
+   :depends r-rlang: 
+   :requirements:
+
+   :additional platforms:
+      
+
+   .. rubric:: Installation
+
+  You need a conda-compatible package manager
+  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
+  and the Bioconda channel already activated (see :ref:`set-up-channels`).
+
+  While any of above package managers is fine, it is currently recommended to use either
+  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
+  We will show all commands using mamba below, but the arguments are the same for the two
+  others.
+
+  Given that you already have a conda environment in which you want to have this package, install with::
+
+      mamba install bioconductor-anndatar
+
+   and update with::
+
+      mamba update bioconductor-anndatar
+
+  To create a new environment, run::
+
+      mamba create --name myenvname bioconductor-anndatar
+
+  with ``myenvname`` being a reasonable name for the environment
+  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).
+
+  Alternatively, use the docker container::
+
+      docker pull quay.io/biocontainers/bioconductor-anndatar:<tag>
+
+   (see `bioconductor-anndatar/tags`_ for valid values for ``<tag>``)
+
+
+.. |downloads_bioconductor-anndatar| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-anndatar.svg?style=flat
+   :target: https://anaconda.org/bioconda/bioconductor-anndatar
+   :alt:   (downloads)
+.. |docker_bioconductor-anndatar| image:: https://quay.io/repository/biocontainers/bioconductor-anndatar/status
+   :target: https://quay.io/repository/biocontainers/bioconductor-anndatar
+.. _`bioconductor-anndatar/tags`: https://quay.io/repository/biocontainers/bioconductor-anndatar?tab=tags
+
+
+.. raw:: html
+
+    <script>
+        var package = "bioconductor-anndatar";
+        var versions = ["1.0.0"];
+    </script>
+
+
+
+
+
+
+Download stats
+-----------------
+
+.. raw:: html
+    :file: ../../templates/package_dashboard.html
+
+Link to this page
+-----------------
+
+Render an |install-with-bioconda| badge with the following MarkDown::
+
+   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-anndatar/README.html)
+
+.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
+   :target: http://bioconda.github.io/recipes/bioconductor-anndatar/README.html

_sources/recipes/biovalid/README.rst.txt

@@ -27,7 +27,7 @@ biovalid
 
 
 
-      ``0.3.0-0``
+      ``0.4.0-0``,  ``0.3.0-0``
 
 
 
@@ -83,7 +83,7 @@ biovalid
 
     <script>
         var package = "biovalid";
-        var versions = ["0.3.0"];
+        var versions = ["0.4.0","0.3.0"];
     </script>
 
 

_sources/recipes/flexiformatter/README.rst.txt

@@ -27,7 +27,7 @@ flexiformatter
 
 
 
-      ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0``
+      ``1.0.6-0``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0``
 
 
 
@@ -86,7 +86,7 @@ flexiformatter
 
     <script>
         var package = "flexiformatter";
-        var versions = ["1.0.5","1.0.4","1.0.3","1.0.2"];
+        var versions = ["1.0.6","1.0.5","1.0.4","1.0.3","1.0.2"];
     </script>
 
 

_sources/recipes/giatools/README.rst.txt

@@ -28,10 +28,10 @@ giatools
 
       .. raw:: html
 
-         <details><summary><span class="truncated-version-list"><code>0.7.1-0</code>,  <code>0.7.0-0</code>,  <code>0.6.0-0</code>,  <code>0.5.2-0</code>,  <code>0.5.0-0</code>,  <code>0.4.1-0</code>,  <code>0.4.0-0</code>,  <code>0.3.2-0</code>,  <code>0.3.1-0</code>,  </span></summary>
+         <details><summary><span class="truncated-version-list"><code>0.7.3-0</code>,  <code>0.7.1-0</code>,  <code>0.7.0-0</code>,  <code>0.6.0-0</code>,  <code>0.5.2-0</code>,  <code>0.5.0-0</code>,  <code>0.4.1-0</code>,  <code>0.4.0-0</code>,  <code>0.3.2-0</code>,  </span></summary>
 
 
-      ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.0-0``,  ``0.5.2-0``,  ``0.5.0-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.3-0``,  ``0.2-0``,  ``0.1.2-0``,  ``0.1.1-0``,  ``0.1-0``
+      ``0.7.3-0``,  ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.0-0``,  ``0.5.2-0``,  ``0.5.0-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.3-0``,  ``0.2-0``,  ``0.1.2-0``,  ``0.1.1-0``,  ``0.1-0``
 
 
       .. raw:: html
@@ -96,7 +96,7 @@ giatools
 
     <script>
         var package = "giatools";
-        var versions = ["0.7.1","0.7.0","0.6.0","0.5.2","0.5.0"];
+        var versions = ["0.7.3","0.7.1","0.7.0","0.6.0","0.5.2"];
     </script>
 
 

_sources/recipes/is6110/README.rst.txt

@@ -27,7 +27,7 @@ is6110
 
 
 
-      ``0.2.0-0``
+      ``0.3.0-0``,  ``0.2.0-0``
 
 
 
@@ -87,7 +87,7 @@ is6110
 
     <script>
         var package = "is6110";
-        var versions = ["0.2.0"];
+        var versions = ["0.3.0","0.2.0"];
     </script>
 
 

_sources/recipes/local-cd-search/README.rst.txt

@@ -0,0 +1,113 @@
+:orphan:  .. only available via index, not via toctree
+
+.. title:: Package Recipe 'local-cd-search'
+.. highlight: bash
+
+local-cd-search
+===============
+
+.. conda:recipe:: local-cd-search
+   :replaces_section_title:
+   :noindex:
+
+   Protein annotation using local PSSM databases from CDD.
+
+   :homepage: https://github.com/apcamargo/local-cd-search
+   :license: MIT / MIT
+   :recipe: /`local-cd-search <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/local-cd-search>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/local-cd-search/meta.yaml>`_
+
+   
+
+
+.. conda:package:: local-cd-search
+
+   |downloads_local-cd-search| |docker_local-cd-search|
+
+   :versions:
+      
+      
+
+      ``0.2.0-0``
+
+      
+
+   
+   :depends blast: ``>=2.16.0,<3``
+   :depends click: ``>=8.3``
+   :depends python: ``>=3.10``
+   :depends rich: ``>=14.2``
+   :depends rich-click: ``>=1.9``
+   :depends rpsbproc: ``>=0.5,<0.6``
+   :requirements:
+
+   :additional platforms:
+      
+
+   .. rubric:: Installation
+
+  You need a conda-compatible package manager
+  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
+  and the Bioconda channel already activated (see :ref:`set-up-channels`).
+
+  While any of above package managers is fine, it is currently recommended to use either
+  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
+  We will show all commands using mamba below, but the arguments are the same for the two
+  others.
+
+  Given that you already have a conda environment in which you want to have this package, install with::
+
+      mamba install local-cd-search
+
+   and update with::
+
+      mamba update local-cd-search
+
+  To create a new environment, run::
+
+      mamba create --name myenvname local-cd-search
+
+  with ``myenvname`` being a reasonable name for the environment
+  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).
+
+  Alternatively, use the docker container::
+
+      docker pull quay.io/biocontainers/local-cd-search:<tag>
+
+   (see `local-cd-search/tags`_ for valid values for ``<tag>``)
+
+
+.. |downloads_local-cd-search| image:: https://img.shields.io/conda/dn/bioconda/local-cd-search.svg?style=flat
+   :target: https://anaconda.org/bioconda/local-cd-search
+   :alt:   (downloads)
+.. |docker_local-cd-search| image:: https://quay.io/repository/biocontainers/local-cd-search/status
+   :target: https://quay.io/repository/biocontainers/local-cd-search
+.. _`local-cd-search/tags`: https://quay.io/repository/biocontainers/local-cd-search?tab=tags
+
+
+.. raw:: html
+
+    <script>
+        var package = "local-cd-search";
+        var versions = ["0.2.0"];
+    </script>
+
+
+
+
+
+
+Download stats
+-----------------
+
+.. raw:: html
+    :file: ../../templates/package_dashboard.html
+
+Link to this page
+-----------------
+
+Render an |install-with-bioconda| badge with the following MarkDown::
+
+   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/local-cd-search/README.html)
+
+.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
+   :target: http://bioconda.github.io/recipes/local-cd-search/README.html