Updated docs to commit a90cc393edcf62555850a01c4d94937ec4b6b605

Author: actions-user

_sources/recipes/arborator/README.rst.txt

@@ -26,9 +26,17 @@ arborator
    :versions:
 
 
+      .. raw:: html
 
-      ``1.1.0-0``,  ``1.0.6-1``,  ``1.0.6-0``,  ``1.0.0-5``,  ``1.0.0-4``,  ``1.0.0-3``,  ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0``
+         <details><summary><span class="truncated-version-list"><code>1.2.0-0</code>,  <code>1.1.0-0</code>,  <code>1.0.6-1</code>,  <code>1.0.6-0</code>,  <code>1.0.0-5</code>,  <code>1.0.0-4</code>,  <code>1.0.0-3</code>,  <code>1.0.0-2</code>,  <code>1.0.0-1</code>,  </span></summary>
+      
+
+      ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.6-1``,  ``1.0.6-0``,  ``1.0.0-5``,  ``1.0.0-4``,  ``1.0.0-3``,  ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0``
+
+      
+      .. raw:: html
 
+         </details>
 
 
 
@@ -94,7 +102,7 @@ arborator
 
     <script>
         var package = "arborator";
-        var versions = ["1.1.0","1.0.6","1.0.6","1.0.0","1.0.0"];
+        var versions = ["1.2.0","1.1.0","1.0.6","1.0.6","1.0.0"];
     </script>
 
 

_sources/recipes/arboreto/README.rst.txt

@@ -27,12 +27,13 @@ arboreto
 
 
 
-      ``0.1.6-0``,  ``0.1.5-0``
+      ``0.1.6-1``,  ``0.1.6-0``,  ``0.1.5-0``
 
 
 
 
    :depends dask: 
+   :depends dask-expr: ``<1.0.0``
    :depends distributed: 
    :depends numpy: 
    :depends pandas: 
@@ -89,7 +90,7 @@ arboreto
 
     <script>
         var package = "arboreto";
-        var versions = ["0.1.6","0.1.5"];
+        var versions = ["0.1.6","0.1.6","0.1.5"];
     </script>
 
 

_sources/recipes/arcs/README.rst.txt

@@ -42,7 +42,7 @@ arcs
 
    :depends btllib: ``>=1.7.3,<2.0a0``
    :depends libcxx: ``>=18``
-   :depends libzlib: ``>=1.2.13,<2.0a0``
+   :depends libzlib: ``>=1.3.1,<2.0a0``
    :depends llvm-openmp: ``>=18.1.8``
    :depends make: 
    :requirements:

_sources/recipes/art_modern-openmpi/README.rst.txt

@@ -13,7 +13,7 @@ art_modern-openmpi
    Modernized ART simulator of diverse Next\-Generation Sequencing reads with MPI support
 
    :homepage: https://github.com/YU-Zhejian/art_modern
-   :documentation: https://github.com/YU-Zhejian/art_modern/releases/download/1.2.0/art_modern.pdf
+   :documentation: https://github.com/YU-Zhejian/art_modern/releases/download/1.3.0/art_modern.pdf
 
    :license: GPL3 / GPL-3.0-only
    :recipe: /`art_modern-openmpi <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/art_modern-openmpi>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/art_modern-openmpi/meta.yaml>`_
@@ -29,7 +29,7 @@ art_modern-openmpi
 
 
 
-      ``1.2.0-0``
+      ``1.3.0-0``,  ``1.2.0-0``
 
 
 
@@ -97,7 +97,7 @@ art_modern-openmpi
 
     <script>
         var package = "art_modern-openmpi";
-        var versions = ["1.2.0"];
+        var versions = ["1.3.0","1.2.0"];
     </script>
 
 

_sources/recipes/baktfold/README.rst.txt

@@ -29,7 +29,7 @@ baktfold
 
 
 
-      ``0.0.2-0``
+      ``0.0.3-0``,  ``0.0.2-0``
 
 
 
@@ -102,7 +102,7 @@ baktfold
 
     <script>
         var package = "baktfold";
-        var versions = ["0.0.2"];
+        var versions = ["0.0.3","0.0.2"];
     </script>
 
 

_sources/recipes/bioconductor-dada2/README.rst.txt

@@ -32,7 +32,7 @@ bioconductor-dada2
          <details><summary><span class="truncated-version-list"><code>1.34.0-2</code>,  <code>1.34.0-1</code>,  <code>1.34.0-0</code>,  <code>1.30.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-1</code>,  <code>1.26.0-0</code>,  <code>1.22.0-2</code>,  <code>1.22.0-1</code>,  </span></summary>
 
 
-      ``1.34.0-2``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.22.0-2``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.4-0``,  ``1.2-0``,  ``1.0.3-0``,  ``0.99.10-0``,  ``0.10.4-0``,  ``0.10.3-0``,  ``0.10.1-0``,  ``0.10.0-0``
+      ``1.34.0-2``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.22.0-2``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4-0``,  ``1.4.0-0``,  ``1.2-0``,  ``1.0.3-0``,  ``0.99.10-0``,  ``0.10.4-0``,  ``0.10.3-0``,  ``0.10.1-0``,  ``0.10.0-0``
 
 
       .. raw:: html

_sources/recipes/bubblefinder/README.rst.txt

@@ -0,0 +1,111 @@
+:orphan:  .. only available via index, not via toctree
+
+.. title:: Package Recipe 'bubblefinder'
+.. highlight: bash
+
+bubblefinder
+============
+
+.. conda:recipe:: bubblefinder
+   :replaces_section_title:
+   :noindex:
+
+   BubbleFinder \- detecting superbubbles\/snarls in graphs
+
+   :homepage: https://github.com/algbio/BubbleFinder
+   :license: MIT
+   :recipe: /`bubblefinder <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bubblefinder>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bubblefinder/meta.yaml>`_
+
+   
+
+
+.. conda:package:: bubblefinder
+
+   |downloads_bubblefinder| |docker_bubblefinder|
+
+   :versions:
+      
+      
+
+      ``1.0.1-0``
+
+      
+
+   
+   :depends coin-or-cbc: ``>=2.10.12,<2.11.0a0``
+   :depends coincbc: 
+   :depends libgcc: ``>=13``
+   :depends libstdcxx: ``>=13``
+   :requirements:
+
+   :additional platforms:
+      
+
+   .. rubric:: Installation
+
+  You need a conda-compatible package manager
+  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
+  and the Bioconda channel already activated (see :ref:`set-up-channels`).
+
+  While any of above package managers is fine, it is currently recommended to use either
+  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
+  We will show all commands using mamba below, but the arguments are the same for the two
+  others.
+
+  Given that you already have a conda environment in which you want to have this package, install with::
+
+      mamba install bubblefinder
+
+   and update with::
+
+      mamba update bubblefinder
+
+  To create a new environment, run::
+
+      mamba create --name myenvname bubblefinder
+
+  with ``myenvname`` being a reasonable name for the environment
+  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).
+
+  Alternatively, use the docker container::
+
+      docker pull quay.io/biocontainers/bubblefinder:<tag>
+
+   (see `bubblefinder/tags`_ for valid values for ``<tag>``)
+
+
+.. |downloads_bubblefinder| image:: https://img.shields.io/conda/dn/bioconda/bubblefinder.svg?style=flat
+   :target: https://anaconda.org/bioconda/bubblefinder
+   :alt:   (downloads)
+.. |docker_bubblefinder| image:: https://quay.io/repository/biocontainers/bubblefinder/status
+   :target: https://quay.io/repository/biocontainers/bubblefinder
+.. _`bubblefinder/tags`: https://quay.io/repository/biocontainers/bubblefinder?tab=tags
+
+
+.. raw:: html
+
+    <script>
+        var package = "bubblefinder";
+        var versions = ["1.0.1"];
+    </script>
+
+
+
+
+
+
+Download stats
+-----------------
+
+.. raw:: html
+    :file: ../../templates/package_dashboard.html
+
+Link to this page
+-----------------
+
+Render an |install-with-bioconda| badge with the following MarkDown::
+
+   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bubblefinder/README.html)
+
+.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
+   :target: http://bioconda.github.io/recipes/bubblefinder/README.html

_sources/recipes/clumppling/README.rst.txt

@@ -31,7 +31,7 @@ clumppling
 
 
 
-      ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.3-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.3.2-0``
+      ``1.5.0-0``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.3-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.3.2-0``
 
 
 
@@ -95,7 +95,7 @@ clumppling
 
     <script>
         var package = "clumppling";
-        var versions = ["1.3.0","1.2.0","1.1.3","1.0.2","1.0.1"];
+        var versions = ["1.5.0","1.3.0","1.2.0","1.1.3","1.0.2"];
     </script>
 
 

_sources/recipes/coreprofiler/README.rst.txt

@@ -30,7 +30,7 @@ coreprofiler
 
 
 
-      ``1.1.6-0``,  ``1.1.5-0``,  ``1.1.4-0``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1.1-0``
+      ``1.1.7-0``,  ``1.1.6-0``,  ``1.1.5-0``,  ``1.1.4-0``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1.1-0``
 
 
 
@@ -93,7 +93,7 @@ coreprofiler
 
     <script>
         var package = "coreprofiler";
-        var versions = ["1.1.6","1.1.5","1.1.4","1.1.3","1.1.2"];
+        var versions = ["1.1.7","1.1.6","1.1.5","1.1.4","1.1.3"];
     </script>
 
 

_sources/recipes/ctyper/README.rst.txt

@@ -27,24 +27,21 @@ ctyper
 
 
 
-      ``1.0.1-0``,  ``1.0-0``
+      ``1.0.5-0``,  ``1.0.1-0``,  ``1.0-0``
 
 
 
 
    :depends eigen: 
-   :depends htslib: ``>=1.21,<1.23.0a0``
+   :depends htslib: ``>=1.21``
+   :depends htslib: ``>=1.22.1,<1.23.0a0``
    :depends libgcc: ``>=13``
    :depends libstdcxx: ``>=13``
    :depends libzlib: ``>=1.3.1,<2.0a0``
    :requirements:
 
    :additional platforms:
 
-      .. raw:: html
-
-         <span class="additional-platforms"><code>linux-aarch64</code></span>
-      
 
    .. rubric:: Installation
 
@@ -91,7 +88,7 @@ ctyper
 
     <script>
         var package = "ctyper";
-        var versions = ["1.0.1","1.0"];
+        var versions = ["1.0.5","1.0.1","1.0"];
     </script>