initial bioconda release of intron-prospector

fixed sh256

set PKG_CONFIG_PATH for bioconda test env

add shell tracing to try to determine why pkg-config is failing

another try at pkg-confg

Claude was wrong; try a different fix to htslib pkg-config

Claude was right, trying something else

try an ls to look at pc files

try BUILD_PREFIX

try passing htslib location to configure

bioconda debug

bioconda debug

bioconda debug

bioconda debug

try using pkgconfig again, don't know why it isn't bring in libraries

Author: BiocondaBot

recipes/intron-prospector/build.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+set -eu -o pipefail
+set -x
+
+export PKG_CONFIG_PATH=${PREFIX}/lib/pkgconfig:${PKG_CONFIG_PATH:-}
+export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+./configure --prefix="${PREFIX}" \
+  CXX="${CXX}" LDFLAGS="${LDFLAGS}" CPPFLAGS="${CPPFLAGS}" \
+  CXXFLAGS="${CXXFLAGS}" || cat config.log
+
+make -j"${CPU_COUNT}"
+make install

recipes/intron-prospector/meta.yaml

@@ -0,0 +1,54 @@
+{% set name = "intron-prospector" %}
+{% set version = "1.5.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/diekhans/intron-prospector/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 7d3b76d936a8f7d5fbd78412b30f308dbf97e5d1cde68012d67846d5d6b31382
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('intron-prospector', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - pkg-config
+    - zlib
+    - htslib
+  host:
+    - zlib
+    - htslib
+    - libxcrypt
+    - xz
+  run:
+    - zlib
+    - htslib
+    - libxcrypt
+    - xz
+
+test:
+  commands:
+    - intron-prospector --help
+    - intron-prospector-merge --help
+
+about:
+  home: "https://github.com/diekhans/intron-prospector"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Identify putative introns from RNA-Seq alignments of short and long reads"
+  dev_url: "https://github.com/diekhans/intron-prospector"
+  doc_url: "https://github.com/diekhans/intron-prospector/blob/v{{ version }}/README.md"
+
+extra:
+  recipe-maintainers:
+    - diekhans
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64