Hi, Im running phylophan for 10000 genomes, it working but always show me this error during blastp, could you give me some suggestion? thanks.
[e] Command '['/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'blastp', '--quiet', '--threads', '8', '--outfmt', '6', '--more-sensitive', '--id', '50', '--max-hsps', '35', '-k', '0', '--query', 'output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa', '--db', 'phylophlan_databases/phylophlan/phylophlan.dmnd', '--out', 'output_dir_tree_3/tmp/map_aa/GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp']' died with <Signals.SIGSEGV: 11>.
[e] error while mapping
{'program_name': '/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'params': 'blastp --quiet --threads 8 --outfmt 6 --more-sensitive --id 50 --max-hsps 35 -k 0', 'input': '--query', 'database': '--db', 'output': '--out', 'version': 'version', 'command_line': '#program_name# #params# #input# #database# #output#'}
output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa
phylophlan_databases/phylophlan/phylophlan.dmnd
output_dir_tree_3/tmp/map_aa
GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp
False
[e] Command '['/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'blastp', '--quiet', '--threads', '8', '--outfmt', '6', '--more-sensitive', '--id', '50', '--max-hsps', '35', '-k', '0', '--query', 'output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa', '--db', 'phylophlan_databases/phylophlan/phylophlan.dmnd', '--out', 'output_dir_tree_3/tmp/map_aa/GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp']' died with <Signals.SIGSEGV: 11>.
[e] gene_markers_identification crashed
Hi, Im running phylophan for 10000 genomes, it working but always show me this error during blastp, could you give me some suggestion? thanks.
[e] Command '['/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'blastp', '--quiet', '--threads', '8', '--outfmt', '6', '--more-sensitive', '--id', '50', '--max-hsps', '35', '-k', '0', '--query', 'output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa', '--db', 'phylophlan_databases/phylophlan/phylophlan.dmnd', '--out', 'output_dir_tree_3/tmp/map_aa/GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp']' died with <Signals.SIGSEGV: 11>.
[e] error while mapping
{'program_name': '/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'params': 'blastp --quiet --threads 8 --outfmt 6 --more-sensitive --id 50 --max-hsps 35 -k 0', 'input': '--query', 'database': '--db', 'output': '--out', 'version': 'version', 'command_line': '#program_name# #params# #input# #database# #output#'}
output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa
phylophlan_databases/phylophlan/phylophlan.dmnd
output_dir_tree_3/tmp/map_aa
GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp
False
[e] Command '['/condo/ieg/mengyuan/packages/new_conda_env/phylophlan/bin/diamond', 'blastp', '--quiet', '--threads', '8', '--outfmt', '6', '--more-sensitive', '--id', '50', '--max-hsps', '35', '-k', '0', '--query', 'output_dir_tree_3/tmp/clean_aa/GCA_029636785.1_ASM2963678v1_genomic.faa', '--db', 'phylophlan_databases/phylophlan/phylophlan.dmnd', '--out', 'output_dir_tree_3/tmp/map_aa/GCA_029636785.1_ASM2963678v1_genomic.b6o.bkp']' died with <Signals.SIGSEGV: 11>.
[e] gene_markers_identification crashed