app-omero/docker-compose.yml at master · bibbox/app-omero · GitHub

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version: "3"
networks:
    bibbox-default-network:
      external: true

services:

  omero-db:
    image: "postgres:11"
    restart: unless-stopped
    container_name: omero-db
    environment:
      POSTGRES_USER: omero
      POSTGRES_DB: omero
      POSTGRES_PASSWORD: omero
    networks:
      - bibbox-default-network
    volumes:
      - ./data/postgres:/var/lib/postgresql/data:rw

  omero-server:
    image: "openmicroscopy/omero-server:5.6"
    restart: unless-stopped
    user: "1000:1000"
    container_name: omero-server
    environment:
      CONFIG_omero_db_host: omero-db
      CONFIG_omero_db_user: omero
      CONFIG_omero_db_pass: omero
      CONFIG_omero_db_name: omero
      ROOTPASS: omero

    networks:
      - bibbox-default-network
    ports:
      - "4063:4063"
      - "4064:4064"
    volumes:
      - ./data/OMERO:/OMERO
      - /home/simon/Documents/master_wsi_annot/LYTestCases/022:/OMERO/share

  omero-web:
    image: "openmicroscopy/omero-web-standalone:5.6"
    container_name: omero-web
    restart: unless-stopped
    environment:
      OMEROHOST: omero-server
    networks:
      - bibbox-default-network
    ports:
      - "4080:4080"

  jupyter:
    build:
      context: ./images/
      dockerfile: Dockerfile
    # user: "1000:100"
    image: jupyter/omero-notebook
    container_name:  jupyter
    restart: unless-stopped
    networks:
        - bibbox-default-network
    environment:
        - JUPYTER_TOKEN=1234asdf
        - GRANT_SUDO=1
    ports:
        - "8888:8888"
    volumes:
        - ./data/notebooks:/home/jovyan/work
        - /var/run/docker.sock:/var/run/docker.sock:rw