med-imagetools/pyproject.toml at main · bhklab/med-imagetools · GitHub

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[project]
name = "med-imagetools"
version = "2.14.0"
description = "Med-Imagetools: Transparent and Reproducible Medical Image Processing Pipelines in Python"
authors = [
    { name = "Sejin Kim" },
    { name = "Michal Kazmierski" },
    { name = "Kevin Qu" },
    { name = "Vishwesh Ramanathan" },
    { name = "Jermiah Joseph" },
    { name = "Benjamin Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca" },
]
maintainers = [
    { name = "Benjamin Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca" },
]
license = "MIT"
readme = "README.md"
requires-python = ">=3.10,<4"

# Standard dependencies
dependencies = [
    # logging, CLI, and progress bars
    "structlog>=25.0,<26",
    "click>=8.1,<9",
    "tqdm>=4.66.4,<5",
    "rich>=13.9.4",
    "joblib>=1.4.2,<2",
    # data manipulation
    "matplotlib>=3.8.4,<4",
    "numpy<3",
    "pandas<3",
    "dpath>=2.2.0",
    # data handling
    "pydantic-settings>=2.8.1,<3",
    # image processing
    "pydicom>=2.4.4",
    "scikit-image>=0.23.2,<1",
    "simpleitk>=2.4.0,<3",
    "highdicom",
    # lockfile
    "fasteners==0.19",
    "dill>=0.3.8,<1",
    "pyyaml>=6.0,<7",
]

classifiers = [
    "Development Status :: 4 - Beta",
	"Intended Audience :: Developers",
	"Intended Audience :: Healthcare Industry",
	"Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Natural Language :: English",
    "Operating System :: OS Independent",
	"Operating System :: MacOS",
	"Operating System :: POSIX :: Linux",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
	"Topic :: Scientific/Engineering :: Image Processing",
	"Topic :: Scientific/Engineering :: Medical Science Apps.",
	"Topic :: Scientific/Engineering :: Visualization",
	"Topic :: Software Development :: Libraries :: Python Modules",
	"Topic :: Utilities",
	"Typing :: Typed",
]
[project.urls]
homepage = "https://github.com/bhklab/med-imagetools"
documentation = "https://bhklab.github.io/med-imagetools/"
issues = "https://github.com/bhklab/med-imagetools/issues"

# Optional dependencies (extras)
[project.optional-dependencies]
pyvis = ["pyvis>=0.3.2,<0.4"]
datasets = ["pygithub>=2.5.0", "aiohttp>=3.8.1"]
all = [
    "pygithub>=2.5.0",
    "aiohttp>=3.8.1",
    "pyvis>=0.3.2,<0.4",
]

# Entry points for CLI commands
[project.scripts]
imgtools = "imgtools.cli.__main__:cli"

[build-system]
build-backend = "hatchling.build"
requires = ["hatchling"]

[tool.hatch.build]
directory = "dist"

[tool.hatch.build.targets.wheel]
# Automatically discovers packages in `src/`
packages = ["src/imgtools"]
include = ["pyproject.toml", "README.md", "src/imgtools/py.typed", "src/**"]

[tool.semantic_release]
version_variables = ["src/imgtools/__init__.py:__version__"]
version_toml = ["pyproject.toml:project.version"]
upload_to_release = true
remove_dist = false
commit_message = "chore(sem-ver): {version}"
patch_without_tag = true

[tool.semantic_release.branches.main]
match = "(main|master)"

[tool.semantic_release.branches.dev]
# any branch that contains "dev" will be considered a dev branch
match = "(development|dev)"
prerelease = true
prerelease_token = "rc"

[tool.coverage.paths]
source = [
    "src/imgtools",
]

[tool.coverage.run]
omit = [
    "src/imgtools/loggers/**/*.py",
    "src/imgtools/cli/**/*.py",
    "tests/**/*.py",
    "src/imgtools/datasets/sample_images.py", # take forever on GHA
    "src/imgtools/vizualize/**/*.py",
    # ignore all __init__.py files
    "src/imgtools/**/__init__.py",
]

[tool.coverage.report]