pi-HelixNovo/main_env.yaml at main · SamvPy/pi-HelixNovo · GitHub

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name: pihelixnovo_env
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bzip2=1.0.8=h7f98852_4
  - ca-certificates=2022.12.7=ha878542_0
  - ld_impl_linux-64=2.40=h41732ed_0
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=12.2.0=h65d4601_19
  - libgomp=12.2.0=h65d4601_19
  - libnsl=2.0.0=h7f98852_0
  - libsqlite=3.40.0=h753d276_0
  - libuuid=2.32.1=h7f98852_1000
  - libzlib=1.2.13=h166bdaf_4
  - ncurses=6.3=h27087fc_1
  - openssl=3.0.8=h0b41bf4_0
  - pip=23.0.1=pyhd8ed1ab_0
  - python=3.8.16=he550d4f_1_cpython
  - readline=8.1.2=h0f457ee_0
  - tk=8.6.12=h27826a3_0
  - xz=5.2.6=h166bdaf_0
  - pip:
    - absl-py==1.4.0
    - aiohttp==3.8.4
    - aiosignal==1.3.1
    - appdirs==1.4.4
    - async-timeout==4.0.2
    - attrs==22.2.0
    - cachetools==5.3.0
    - certifi==2022.12.7
    - cffi==1.15.1
    - charset-normalizer==3.0.1
    - click==8.1.3
    - contourpy==1.0.7
    - cycler==0.11.0
    - deprecated==1.2.13
    - einops==0.6.0
    - fastobo==0.12.2
    - fonttools==4.38.0
    - frozenlist==1.3.3
    - fsspec==2023.1.0
    - google-auth==2.16.2
    - google-auth-oauthlib==0.4.6
    - grpcio==1.51.3
    - h5py==3.8.0
    - idna==3.4
    - importlib-metadata==6.0.0
    - importlib-resources==5.12.0
    - joblib==1.2.0
    - kiwisolver==1.4.4
    - lark==1.1.5
    - lightning-utilities==0.7.1
    - llvmlite==0.39.1
    - lxml==4.9.2
    - markdown==3.4.1
    - markupsafe==2.1.2
    - matplotlib==3.7.0
    - multidict==6.0.4
    - numba==0.56.4
    - numpy==1.23.5
    - nvidia-cublas-cu11==11.10.3.66
    - nvidia-cuda-nvrtc-cu11==11.7.99
    - nvidia-cuda-runtime-cu11==11.7.99
    - nvidia-cudnn-cu11==8.5.0.96
    - oauthlib==3.2.2
    - packaging==23.0
    - pandas==1.5.3
    - pillow==9.4.0
    - protobuf==4.22.1
    - psutil==5.9.4
    - pyasn1==0.4.8
    - pyasn1-modules==0.2.8
    - pycparser==2.21
    - pygithub==1.58.0
    - pyjwt==2.6.0
    - pynacl==1.5.0
    - pyparsing==3.0.9
    - pyteomics==4.5.6
    - python-dateutil==2.8.2
    - pytorch-lightning==1.9.3
    - pytz==2022.7.1
    - pyyaml==6.0
    - requests==2.28.2
    - requests-oauthlib==1.3.1
    - rsa==4.9
    - scikit-learn==1.2.1
    - scipy==1.10.1
    - setuptools==67.6.0
    - six==1.16.0
    - spectrum-utils==0.4.1
    - tensorboard==2.12.0
    - tensorboard-data-server==0.7.0
    - tensorboard-plugin-wit==1.8.1
    - threadpoolctl==3.1.0
    - torch==1.13.1
    - torchmetrics==0.11.1
    - tqdm==4.64.1
    - typing-extensions==4.5.0
    - urllib3==1.26.14
    - werkzeug==2.2.3
    - wheel==0.40.0
    - wrapt==1.14.1
    - yarl==1.8.2
    - zipp==3.15.0
    - setuptools_scm==4.0.0
    - -i https://pypi.tuna.tsinghua.edu.cn/simple