Merge branch 'osw_parquet_chrom_reader_w_xtra_file_ext' into oswpq_xi… #473
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| name: continuous-integration | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] # remove mac tests | |
| # Latest pyOpenMS supports Python 3.10, and 3.11 | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies for macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install hdf5 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --index-url https://pypi.cs.uni-tuebingen.de/simple/ pyopenms | |
| pip install .[testing,conformer] | |
| - name: Test | |
| run: | | |
| python -m pytest --snapshot-warn-unused test/ # do not fail if unused snapshot, just warn |