update base config files

Author: madscort

config.json

@@ -1,8 +1,7 @@
 {
     "ploidy": 48,
-    "step": "mapping",
+    "step": "all",
     "pooltable": "pooltable.tsv",
-    "decodetable": "decodetable.tsv",
     "outputDir": "../results",
     "reference_genome": "/ngc/projects2/dp_00005/data/predisposed/resources/reference/Homo_sapiens_assembly38_noAlt",
     "bedfile": "/ngc/projects2/dp_00005/data/predisposed/resources/targets/Probes_merged_ok_SSI_PREDiSPOSED-v1_1X_TE-93129556_hg38.bed"

config_qc.json

@@ -2,9 +2,9 @@
     "ploidy": 48,
     "step": "mapping",
     "downsample": 4,
+    "outputDir": "../results_qc_150x",
     "fullQC": "true",
     "pooltable": "pooltable.tsv",
-    "decodetable": "decodetable.tsv",
     "reference_genome": "/ngc/projects2/dp_00005/data/predisposed/resources/reference/Homo_sapiens_assembly38_noAlt",
     "bedfile": "/ngc/projects2/dp_00005/data/predisposed/resources/targets/Probes_merged_ok_SSI_PREDiSPOSED-v1_1X_TE-93129556_hg38.bed"
 }