xiFDR-py/pyproject.toml at main · Rappsilber-Laboratory/xiFDR-py · GitHub

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[build-system]
requires = ["setuptools", "setuptools-scm", "wheel", "Cython"]
build-backend = "setuptools.build_meta"

[project]
name = "xifdr"
dynamic = ["version"]
description = "xiFDR: A tool for FDR analysis in cross-linking mass spectrometry"
authors = [
  { name = "Falk B. Schimweg", email = "git@falk.schimweg.de" }
]
license = { text = "AGPL-3.0-or-later" }
readme = "README.rst"
requires-python = ">=3.9"

# Core dependencies (Standard behavior)
dependencies = [
    "numpy>=2.1.0",
    "pandas>=3.0.0",
    "scipy>=1.15.0",
    "psutil",
    "pyarrow",
    "setuptools_scm",
    "kneed",
    "polars",
]

[project.optional-dependencies]
# Usage: pip install "xifdr[nogil]"
nogil = [
    # Free-threaded Polars Bridge for 3.13+
    "polars @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars-1.36.0b2-py3-none-any.whl ; python_version >= '3.13'",

    # Platform-specific Polars Runtime for 3.13
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp313-cp313t-macosx_11_0_arm64.whl ; sys_platform == 'darwin' and platform_machine == 'arm64' and python_version == '3.13'",
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp313-cp313t-manylinux_2_39_x86_64.whl ; sys_platform == 'linux' and platform_machine == 'x86_64' and python_version == '3.13'",
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp313-cp313t-win_amd64.whl ; sys_platform == 'win32' and python_version == '3.13'",

    # Platform-specific Polars Runtime for 3.14
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp314-cp314t-macosx_11_0_arm64.whl ; sys_platform == 'darwin' and platform_machine == 'arm64' and python_version == '3.14'",
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp314-cp314t-manylinux_2_39_x86_64.whl ; sys_platform == 'linux' and platform_machine == 'x86_64' and python_version == '3.14'",
    "polars-runtime-32 @ https://github.com/Rappsilber-Laboratory/polars-free-threaded/releases/download/v1.36.0-beta.2-ft/polars_runtime_32-1.36.0b2-cp314-cp314t-win_amd64.whl ; sys_platform == 'win32' and python_version == '3.14'",
]

[project.urls]
Homepage = "https://github.com/Rappsilber-Laboratory/xiFDR-py"
Documentation = "https://xifdr-py.readthedocs.io"
Repository = "https://github.com/Rappsilber-Laboratory/xiFDR-py"
Issues = "https://github.com/Rappsilber-Laboratory/xiFDR-py/issues"

[tool.setuptools]
packages = ["xifdr"]

[tool.setuptools_scm]
write_to = "xifdr/_version.py"