theoretical spectra of crosslinked peptides

[FraenzeMueller]

Dear Lutz,

Is it possible to use this tool (peptide2ions.PeptideToIonWindow) entirely in command line mode, meaning to pass a list of several peptides, charge states and linkage sites through the function and get a .csv or .txt file out?

Best wishes,
Fränze

[lutzfischer]

not at the moment - can have a look how much work it would be.

[FraenzeMueller]

yes, please. it would be awesome to be able to use it.

Best wishes