CI: build openms-insight from source before tests (mirrors Dockerfile) #493
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| name: continuous-integration | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| # Match the python version used in the committed Dockerfile (release/3.5.0) | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: "21" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| # OpenMS-Insight (Phase-3) is not on PyPI: build it from the migration branch | |
| # (Vue bundle + Python) and install from source -- mirrors the Dockerfiles. | |
| git clone -b claude/kind-heisenberg-u6dVm --single-branch --depth 1 \ | |
| https://github.com/t0mdavid-m/openms-insight.git /tmp/openms-insight | |
| ( cd /tmp/openms-insight/js-component && npm install && npm run build ) | |
| mkdir -p /tmp/openms-insight/openms_insight/js-component | |
| cp -r /tmp/openms-insight/js-component/dist \ | |
| /tmp/openms-insight/openms_insight/js-component/dist | |
| pip install /tmp/openms-insight | |
| pip install -r requirements.txt # test with requirements file so can easily bump with dependabot | |
| pip install pytest fakeredis | |
| - name: Test | |
| run: | | |
| python -m pytest test_gui.py tests/ | |